Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49520 308 / 1e-102 SWIB complex BAF60b domain-containing protein (.1) AT3G19080 304 / 6e-100 SWIB complex BAF60b domain-containing protein (.1) AT4G22360 139 / 2e-37 SWIB complex BAF60b domain-containing protein (.1) AT2G14880 79 / 2e-17 SWIB/MDM2 domain superfamily protein (.1) AT4G34290 76 / 3e-16 SWIB/MDM2 domain superfamily protein (.1) AT2G35605 73 / 6e-16 SWIB/MDM2 domain superfamily protein (.1) AT3G03590 71 / 1e-14 SWIB/MDM2 domain superfamily protein (.1) AT1G31760 63 / 3e-12 SWIB/MDM2 domain superfamily protein (.1) AT4G26810 60 / 4e-11 SWIB/MDM2 domain superfamily protein (.1.2) AT3G01890 49 / 3e-06 SWIB/MDM2 domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G106700 [exp] 517 / 0 AT1G49520 301 / 5e-100 SWIB complex BAF60b domain-containing protein (.1) Potri.005G134500 [exp] 244 / 6e-78 AT3G19080 226 / 3e-70 SWIB complex BAF60b domain-containing protein (.1) Potri.006G010700 [exp] 139 / 1e-37 AT4G22360 303 / 2e-100 SWIB complex BAF60b domain-containing protein (.1) Potri.016G013400 [exp] 138 / 5e-37 AT4G22360 301 / 1e-99 SWIB complex BAF60b domain-containing protein (.1) Potri.001G297400 [exp] 77 / 6e-17 AT2G14880 142 / 3e-44 SWIB/MDM2 domain superfamily protein (.1) Potri.009G092200 [exp] 74 / 8e-16 AT2G14880 169 / 7e-55 SWIB/MDM2 domain superfamily protein (.1) Potri.013G070600 [exp] 69 / 4e-14 AT2G35605 108 / 2e-31 SWIB/MDM2 domain superfamily protein (.1) Potri.007G039350 [exp] 56 / 2e-09 AT3G19080 118 / 4e-32 SWIB complex BAF60b domain-containing protein (.1) Potri.015G137600 [exp] 51 / 3e-08 AT4G26810 181 / 1e-60 SWIB/MDM2 domain superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009333 [exp] 221 / 3e-69 AT3G19080 266 / 4e-87 SWIB complex BAF60b domain-containing protein (.1) Lus10019640 [exp] 181 / 4e-53 AT3G19080 256 / 2e-81 SWIB complex BAF60b domain-containing protein (.1) Lus10014892 [exp] 113 / 1e-27 AT4G22360 243 / 2e-76 SWIB complex BAF60b domain-containing protein (.1) Lus10016581 [exp] 113 / 1e-27 AT4G22360 190 / 1e-55 SWIB complex BAF60b domain-containing protein (.1) Lus10005667 [exp] 77 / 7e-17 AT3G03590 118 / 4e-35 SWIB/MDM2 domain superfamily protein (.1) Lus10013893 [exp] 74 / 1e-15 AT2G14880 143 / 7e-45 SWIB/MDM2 domain superfamily protein (.1) Lus10002106 [exp] 67 / 5e-14 AT4G34290 109 / 2e-32 SWIB/MDM2 domain superfamily protein (.1) Lus10035214 [exp] 49 / 3e-06 AT5G14170 553 / 0.0 SWIB/MDM2 domain superfamily protein (.1) Lus10038799 [exp] 48 / 5e-06 AT4G26810 160 / 1e-50 SWIB/MDM2 domain superfamily protein (.1.2) Lus10032049 [exp] 49 / 6e-06 AT5G14170 756 / 0.0 SWIB/MDM2 domain superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02201 [poplar] [flax] SWIB SWIB/MDM2 domain PF08766 [poplar] [flax] DEK_C DEK C terminal domain
Representative CDS sequence Show only first row Show all	>Potri.004G145200.2 pacid=42796584 polypeptide=Potri.004G145200.2.p locus=Potri.004G145200 ID=Potri.004G145200.2.v4.1 annot-version=v4.1 ATGGTGTCGGACTCGGACCTCGTGACTCGGCTCCGTGAAATACTCAGGAGGTCGGACTTGGACACGGCCACTGCCGGCAGTATACGGCGGCAGTTGGAGG AGGATCTCGGCGTTGATTTATCGGAGAAAAAGAAGTTTATTAGAGAGCAAATTGATACTTTTCTCGAAACCTTTAATGGAGGAGAAGGTAAATCAGAGAA TGTGTCAGAAAATGAAAATACCGAAAACGACGCCGTTGGTGACGAGGAAAATGAAAACGACGCCGTTAAAGAAGAAGAGGAAGAGGTAGAGACTGAGACA AAGGAAAGCAAAGGGTCAAACAAGACAGGAAAAGTGAGGAAAAGAGGTGGCTTTACTAAATTAAGTAGCTTATCTCCACAACTTCAAGCAGTTGTTGGAG TGCCTGAATTGGCCAGAACTGAGGTTGTGAAGAAGCTTTGGGCCTATATCCGCGAGAACAACTTGCAGGATCCAAAGAATAGGAAAAAAATAAAATGTGA TGAAGCATTGCGTGCTGTCTTCCGTGTAAATTCAATTGACATGTTTCAAATGAGCAAAGCCCTGTCCAAGCATATTTGGCCATTAACTGGAGAAGATGAA AGTGTAAAACAGAAAGAAAAATGTGAAGACAGTAATGATTTTGGGAATGAAGGAGACAATGGAGGGGAAGAGGAGGAGGAACAAGAAGAGGAGGAAGAGG AAGAGGTAAAGAAAGAGAGTAATGGAAGAAGCAAGAAAGGACGTAAATCTGCTAAGGTGGATGAAAATGTTAAGAAAAGAGGAGGCGGCTTTACTAAATT GTGCAGTCTTTCTCCTCAACTTCAAGAGCTTGTTGGTGTTCCTGAATTGGCCAGAACTGGGGTTGTGAAGAAGCTCTGGGCCTATATCCGGGAGAAGAAT TTGCAAGATCCAAAGAATAAGCGAAACATAATATGTGATGAATCACTGCGTGCTCTTTTTGATGTTGATTCTATTGACATGTTTCAAATGAATAAAGCCC TGTCCAAACACATATGGGCTGTCTGTGAGGAAGATGCTCCAAGCAACTCTTCACCAAAGGAAAAGGGGGCTAAACAAGGAAGAGAAGAAGATCCTGATGA ACCTAAACAGAAAGAAAAACGGCAGAAGAAAGGATCCTGCTGA
AA sequence Show only first row Show all	>Potri.004G145200.2 pacid=42796584 polypeptide=Potri.004G145200.2.p locus=Potri.004G145200 ID=Potri.004G145200.2.v4.1 annot-version=v4.1 MVSDSDLVTRLREILRRSDLDTATAGSIRRQLEEDLGVDLSEKKKFIREQIDTFLETFNGGEGKSENVSENENTENDAVGDEENENDAVKEEEEEVETET KESKGSNKTGKVRKRGGFTKLSSLSPQLQAVVGVPELARTEVVKKLWAYIRENNLQDPKNRKKIKCDEALRAVFRVNSIDMFQMSKALSKHIWPLTGEDE SVKQKEKCEDSNDFGNEGDNGGEEEEEQEEEEEEEVKKESNGRSKKGRKSAKVDENVKKRGGGFTKLCSLSPQLQELVGVPELARTGVVKKLWAYIREKN LQDPKNKRNIICDESLRALFDVDSIDMFQMNKALSKHIWAVCEEDAPSNSSPKEKGAKQGREEDPDEPKQKEKRQKKGSC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G49520			SWIB complex BAF60b domain-con...		Potri.004G145200 [exp]	0	1
					Potri.003G148601 [exp]	5.74	0.9284
AT3G51650			unknown protein		Potri.006G107500 [exp]	5.91	0.9172
AT5G43490			unknown protein		Potri.017G058500 [exp]	6.16	0.9320
AT1G65280			DNAJ heat shock N-terminal dom...		Potri.019G083700 [exp]	9.21	0.9038
AT1G61730	GeBP		DNA-binding storekeeper protei...		Potri.005G075000 [exp]	12.96	0.8889
AT3G15120			P-loop containing nucleoside t...		Potri.011G141400 [exp]	13.22	0.9123
AT5G47680		AtTRM, TRM10	tRNA modification 10, unknown ...		Potri.016G005500 [exp]	14.89	0.8732
AT1G20920			P-loop containing nucleoside t...		Potri.005G257400 [exp]	15.16	0.9086
AT3G05670			RING/U-box protein (.1)		Potri.013G011400 [exp]	15.90	0.9084
AT3G07610		IBM1	increase in bonsai methylation...		Potri.005G091200 [exp]	16.88	0.8428

Compare expression of checked genes

Potri.004G145200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.