Plant FIBer expression Database

Potri.004G145600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G49510 206 / 1e-66 EMB1273 embryo defective 1273 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G149500
[exp]
42 / 0.0001 AT1G49510 53 / 3e-08 embryo defective 1273 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027929
[exp]
212 / 2e-69 AT1G49510 220 / 2e-72 embryo defective 1273 (.1)
Lus10012054
[exp]
209 / 2e-67 AT1G49510 227 / 3e-74 embryo defective 1273 (.1)
PFAM info
Representative CDS sequence
>Potri.004G145600.1 pacid=42795686 polypeptide=Potri.004G145600.1.p locus=Potri.004G145600 ID=Potri.004G145600.1.v4.1 annot-version=v4.1
ATGACGGCGACAATTACATATCCTTCTCATCTGTTATCTGCCTCCTTTCATCTCCGAACCACAACTACTAAAAATGCTCTTCGACTTCAATCTCCTTCCA
CTCAAGGACCTGAGCAGAGGTCACCACACTATCTCAAAGCTGGTAGCAGTCATCTGGGTGTTAAACTAAGTGGGGTCTTCCAGAAGACTAGGCTCAACAT
CTCTTGTGCAATAAACATGGCCGCTGGACAGTCTGGTGATCCTGAGAAGATAAATTTTGACCATCTAATGAATAAAGCAAGAAAAATCTGGGACCGTTCT
CCTCAACCAGTCAAGAGCTTCCCCTGGAAAAGAGCATTGGAGAACTTCATTCAGCTCATCCTTGACCTATTTGTGATGGTTGTCAAATATTTGTGTGTGC
CTTTACTGGCGGTTTCCTCCCTTAGTGAGATGTCATATTGCGCGCATCAGAAGAAGCTGCTCCTTGTCCCAATTCCACTACTCATTGGCATCATTGTTGC
CGGGGTCGTAAAGGAAACTGCCTTAGAACTATCTCCGCTTCTCAAGGATGCTGAAGTTCCATGGCATCTGATTGTCACTGCAATAGTCTTCACATTGATC
AAATTGCCAGGTCCTTATTATCCATACTGGGGGCGTATATTTATTCCACACTTTGCAAATGGAGTGTTATGGAGGACTCTGTTGTTTGCATTTTCATGA
AA sequence
>Potri.004G145600.1 pacid=42795686 polypeptide=Potri.004G145600.1.p locus=Potri.004G145600 ID=Potri.004G145600.1.v4.1 annot-version=v4.1
MTATITYPSHLLSASFHLRTTTTKNALRLQSPSTQGPEQRSPHYLKAGSSHLGVKLSGVFQKTRLNISCAINMAAGQSGDPEKINFDHLMNKARKIWDRS
PQPVKSFPWKRALENFIQLILDLFVMVVKYLCVPLLAVSSLSEMSYCAHQKKLLLVPIPLLIGIIVAGVVKETALELSPLLKDAEVPWHLIVTAIVFTLI
KLPGPYYPYWGRIFIPHFANGVLWRTLLFAFS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G49510 EMB1273 embryo defective 1273 (.1) Potri.004G145600
[exp]
0 1
AT1G23400 CAF2, ATCAF2 ARABIDOPSIS THALIANA HOMOLOG O... Potri.010G042500
[exp]
6.85 0.9576
AT3G03630 CS26 cysteine synthase 26 (.1) Potri.019G045800
[exp]
7.74 0.9513
AT2G04030 Hsp88.1, AtHsp9... HEAT SHOCK PROTEIN 88.1, EMBRY... Potri.008G112700
[exp]
11.18 0.9472
AT2G38025 Cysteine proteinases superfami... Potri.016G110400
[exp]
13.63 0.9499
AT5G17710 EMB1241 embryo defective 1241, Co-chap... Potri.013G067900
[exp]
14.69 0.9334
AT2G38270 ATGRX2, CXIP2 GLUTAREDOXIN, CAX-interacting ... Potri.016G119200
[exp]
14.96 0.9474
AT3G06730 TRXz, TRXP ,TRX... thioredoxin putative plastidic... Potri.001G028500
[exp]
17.54 0.9434
AT1G23180 ARM repeat superfamily protein... Potri.008G131900
[exp]
20.56 0.9441
AT1G18490 Protein of unknown function (D... Potri.015G055600
[exp]
21.30 0.8754
AT3G02660 EMB2768 EMBRYO DEFECTIVE 2768, Tyrosyl... Potri.014G140400
[exp]
21.77 0.9457

Potri.004G145600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.