Plant FIBer expression Database

Potri.004G145700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G19940 618 / 0 oxidoreductases, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;copper ion binding (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034096
[exp]
626 / 0 AT2G19940 567 / 0.0 oxidoreductases, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;copper ion binding (.1.2)
Lus10003050
[exp]
617 / 0 AT2G19940 560 / 0.0 oxidoreductases, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;copper ion binding (.1.2)
Lus10013239
[exp]
44 / 0.0002 AT1G14810 622 / 0.0 semialdehyde dehydrogenase family protein (.1)
Lus10030759
[exp]
43 / 0.0003 AT1G14810 603 / 0.0 semialdehyde dehydrogenase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF01118 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain
CL0139 GADPH_aa-bio_dh PF02774 Semialdhyde_dhC Semialdehyde dehydrogenase, dimerisation domain
Representative CDS sequence
>Potri.004G145700.5 pacid=42795048 polypeptide=Potri.004G145700.5.p locus=Potri.004G145700 ID=Potri.004G145700.5.v4.1 annot-version=v4.1
ATGAGCAGTGCAACTTTCAGTTCTACCTGCTTCTTGAAGGGTAGTGAAGTGAAAGTTTCAAGCTTGAAGAGTAAAAATGGAAATTGCAAGCTACATGTTG
GTGGGTCAACTTCTTTGTCCACAAAAAGATTGCAGATTTCAAATGCTAAGCAGGAGAAGGAAGTTCGTGTTGCTCTTCTTGGTGCCAGTGGCTATACTGG
TGCAGAGATTATTAGACTTCTTGCAAACCATCCATACTTTGGTATTACTGTGATGACTGCTGATAGAAATGCTGGGAAGTCGATGGATTCTGTATTTCCT
CATTTAATCACACAAAAGGATTTGCCGGTTTTGGTTTCTACCAGCGATGCAGATTTTTCTGATGTTGATGCTGTATTCTGTTGCTTGCCTCATGGAACCA
CACAGGAAATCATCAAAGGTCTTCCCAAGGGATTAAAGATTGTTGATCTTTCAGCGGACTTCCGATTACGAAATGTTTCTGAGTATGAAGAATGGTATGG
CCAGCCACACAGAGCACCTGATTTGCAGGAAGAAGCTGTTTATGGTTTGACTGAAATTTTGAGAGAGGAAATAAAAAATGCACATCTTGTTGCTAATCCT
GGTTGTTATCCAACGTCGATTCAGCTTCCTTTAGTTCCCTTGATAAAGGCCAATCTCATTGAACATAAGAATATTATCGTTGATGCAAAATCTGGTGTGA
GTGGAGCAGGACGTGGTGCTAAGGTGGCAAATTTGTACACTGAATTAACTGAAGGCATCATGTCTTATGGTGTTACAAGGCATCGTCATGTTCCAGAAAT
TGAACAGGGGCTATCCGATGCTGCGCATTCTAAAGTAACCATCAGTTTTACTCCACACTTAATGCCAATGACCCGTGGTATGCAATCAACTATCTATGTG
GAAATGGCTTCAGGAGTGACAACCGACAATTTGTACCAGCAATTGAAAGTTTCTTACCAGGATGAAGAATTTGTAAGATTATTGGAAAAAGGAGCTGTTC
CTCGCACTCATGATGTTCGAGGCTCTAATTATTGTTATATAAATGTATTTCCTGACCGAATTCCTGGCAGAGCAATAATCATATCAGTTATTGATAATCT
TGTGAAGGGGGCTTCTGGTCAAGCTCTACAAAATTTAAATCTAATGATGGGATTTCCAGAAAACACAGGGCTTGGCTACCTGCCATTGTTTCCTTGA
AA sequence
>Potri.004G145700.5 pacid=42795048 polypeptide=Potri.004G145700.5.p locus=Potri.004G145700 ID=Potri.004G145700.5.v4.1 annot-version=v4.1
MSSATFSSTCFLKGSEVKVSSLKSKNGNCKLHVGGSTSLSTKRLQISNAKQEKEVRVALLGASGYTGAEIIRLLANHPYFGITVMTADRNAGKSMDSVFP
HLITQKDLPVLVSTSDADFSDVDAVFCCLPHGTTQEIIKGLPKGLKIVDLSADFRLRNVSEYEEWYGQPHRAPDLQEEAVYGLTEILREEIKNAHLVANP
GCYPTSIQLPLVPLIKANLIEHKNIIVDAKSGVSGAGRGAKVANLYTELTEGIMSYGVTRHRHVPEIEQGLSDAAHSKVTISFTPHLMPMTRGMQSTIYV
EMASGVTTDNLYQQLKVSYQDEEFVRLLEKGAVPRTHDVRGSNYCYINVFPDRIPGRAIIISVIDNLVKGASGQALQNLNLMMGFPENTGLGYLPLFP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G19940 oxidoreductases, acting on the... Potri.004G145700
[exp]
0 1
AT3G28410 F-box/RNI-like superfamily pro... Potri.017G146400
[exp]
1.00 0.7923
AT1G25472 CPuORF54 conserved peptide upstream ope... Potri.008G120050
[exp]
2.82 0.7696
AT3G57630 exostosin family protein (.1.2... Potri.006G054800
[exp]
6.70 0.7721
AT1G75520 SRS5 SHI-related sequence 5 (.1) Potri.002G028500
[exp]
8.00 0.7735
AT2G19540 Transducin family protein / WD... Potri.007G094000
[exp]
10.48 0.7667
AT5G64250 Aldolase-type TIM barrel famil... Potri.017G051800
[exp]
12.00 0.7365
AT5G16290 VAT1 VALINE-TOLERANT 1 (.1.2) Potri.008G078800
[exp]
12.40 0.7276
AT5G67620 unknown protein Potri.007G005600
[exp]
18.81 0.7445
AT4G24240 WRKY ATWRKY7, WRKY7 WRKY DNA-binding protein 7 (.1... Potri.002G123300
[exp]
19.79 0.6353
AT3G16770 AP2_ERF RAP2.03, ATEBP,... RELATED TO AP2 3, ETHYLENE RES... Potri.010G006800
[exp]
21.97 0.7140 RAP2.3,ERF34

Potri.004G145700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.