Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15880 599 / 0 Leucine-rich repeat (LRR) family protein (.1) AT4G33970 582 / 0 Leucine-rich repeat (LRR) family protein (.1) AT3G19020 580 / 0 Leucine-rich repeat (LRR) family protein (.1) AT1G49490 521 / 8e-173 Leucine-rich repeat (LRR) family protein (.1) AT3G24480 418 / 6e-138 Leucine-rich repeat (LRR) family protein (.1) AT4G13340 413 / 1e-132 LRX3 leucine-rich repeat/extensin 3, Leucine-rich repeat (LRR) family protein (.1) AT4G18670 397 / 4e-125 Leucine-rich repeat (LRR) family protein (.1) AT1G12040 388 / 4e-123 LRX1 leucine-rich repeat/extensin 1 (.1) AT5G25550 377 / 5e-123 Leucine-rich repeat (LRR) family protein (.1) AT1G62440 390 / 6e-123 LRX2 leucine-rich repeat/extensin 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G108100 [exp] 765 / 0 AT3G19020 567 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.014G036700 [exp] 532 / 0 AT2G15880 502 / 1e-170 Leucine-rich repeat (LRR) family protein (.1) Potri.018G075900 [exp] 425 / 7e-138 AT3G24480 603 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.006G081200 [exp] 427 / 6e-137 AT1G62440 553 / 0.0 leucine-rich repeat/extensin 2 (.1) Potri.006G158814 [exp] 417 / 3e-136 AT3G24480 614 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.018G151000 [exp] 410 / 2e-134 AT1G62440 533 / 0.0 leucine-rich repeat/extensin 2 (.1) Potri.006G245600 [exp] 407 / 6e-133 AT3G24480 516 / 3e-180 Leucine-rich repeat (LRR) family protein (.1) Potri.007G139200 [exp] 393 / 2e-129 AT4G28380 503 / 9e-179 Leucine-rich repeat (LRR) family protein (.1) Potri.010G083000 [exp] 365 / 2e-118 AT3G22800 477 / 7e-167 Leucine-rich repeat (LRR) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021001 [exp] 496 / 6e-166 AT3G19020 490 / 1e-165 Leucine-rich repeat (LRR) family protein (.1) Lus10012047 [exp] 497 / 9e-166 AT3G19020 508 / 6e-172 Leucine-rich repeat (LRR) family protein (.1) Lus10028097 [exp] 395 / 5e-128 AT1G62440 466 / 7e-157 leucine-rich repeat/extensin 2 (.1) Lus10017727 [exp] 398 / 5e-127 AT3G24480 611 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10033672 [exp] 379 / 9e-124 AT4G28380 488 / 6e-173 Leucine-rich repeat (LRR) family protein (.1) Lus10037905 [exp] 363 / 4e-117 AT4G13340 432 / 9e-149 leucine-rich repeat/extensin 3, Leucine-rich repeat (LRR) family protein (.1) Lus10039362 [exp] 344 / 6e-111 AT3G22800 416 / 2e-143 Leucine-rich repeat (LRR) family protein (.1) Lus10039363 [exp] 330 / 9e-103 AT3G22800 447 / 1e-152 Leucine-rich repeat (LRR) family protein (.1) Lus10041190 [exp] 319 / 6e-101 AT3G22800 421 / 3e-145 Leucine-rich repeat (LRR) family protein (.1) Lus10006611 [exp] 317 / 5e-100 AT3G22800 434 / 3e-150 Leucine-rich repeat (LRR) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.004G146350.1 pacid=42795841 polypeptide=Potri.004G146350.1.p locus=Potri.004G146350 ID=Potri.004G146350.1.v4.1 annot-version=v4.1 ATGGCGAACCCTCTCAGAGCCTTCGGCTGCTTTTTCTTTTTCTCCCTGCTCTTCTCTTCTTTCTCAACCTTCTCTCTTGCCTTAACTGATGCTGAAGCAT CTTATATTGCTCGTCGCCAGCTCTTGACGTTAAATGAAAATAGTGAGCTTCCTCATGAGTTTGAGTATGAGGTCGATGTGAAAATAACCTTCGCAAACCA AAGGCTGAGGAGAGCGTATATTGGTCTTCAGGCCTGGAAAAAGGCAATATACTCCGACCCATTTAACACTACTGGCAATTGGGTTGGCGCCAATGTGTGT GCCTATAATGGTGTGTTTTGTGCACCAGCTCTAGACGACCCCAGTCTGAGCGTTGTGGCAGGTGTTGATCTTAACGGTGCTGACATTGCTGGGCACCTTC CAGCTGAATTAGGGCTTATGACAGATGTTGCATTATTCCACATTAACTCTAACAGGTTTTGTGGTATCATTCCCGAGAGCTTTTCCAAGCTCACACTCAT GTATGAGTTTGATGTCAGCAACAACCGCTTTGTTGGTGATTTCCCTTCTGTTGTTCTATCCTGGCCAAGCCTCAAGTATCTTGACGTCAGATTCAACGAT TTCGAAGGTAGTTTGCCTCCAGAACTCTTCAACAAGGAACTCGATGCTTTGTTCTTGAATGACAACCGATTCACATCCACCATCCCGGAGACAATAGGCA ACTCCGCAGTTTCTGTTGTCACATTTGCTAACAACAAATTCACCGGCTGCATTCCACACAGCGTCGGCAAGATGGCCAACTTGAACGAGGTCATCTTTAT GGGCAATGACCTTGGTGGTTGCTTCCCAGCAGAAATTGGGCTGCTTCGTAATGTGACTGTCTTTGATGCCAGCCACAATGGGTTCACAGGAATCTTGCCG CCCAGCTTTGCAGGCCTAAAGAAGGTTGAACTCTTGGATCTTGCCGACAACAAGCTGACAGGATTTGTGCCTGAGAACATTTGCAAGTTGCCAAGCTTGA CAAACTTCACATTCTCGTATAACTACTTCAAGGGCGAGGCTCAAGCTTGCGTGCCTCCATCAAGGAAAGACATTGTGTTGGATGATACCAGCAATTGCCT GTCTGACAGGCCAAAGCAGAAGTCAGCCAGGACATGTTATCCAGTGGTGAGCCGACCTGTGGATTGCAGCAAGGACAAGTGTGCTGGAGGAGGAGGTTCT TCAAACCCTCATCCAAAGCCCCAACCCACACCACCTACTTCAAAACATGAACCAACTCCATCTCCTCCCAAATCTATTTCTATTTCTACACCAACGCCAC CATCAGCACGGGTCCCCACCCCTCAAACAGCAGAATCACCAAAACCAGAACATGAGTTGCCACAAACTCCGGTTGAACCTATTAGGCCATCGACTCCAAA GATACCCTTACCGTCATCTCCATCAATCAATTCATCTGTCCCATCATCTGATCCATATAATCCAGGATCTGGTGGTCATGGTGAGACACCATTATCACCA AATTATGCACCGTCACCTGATTCATTTGGTAACTCACCTATTGGCCACCACGATACACCACCATCACTCTCTATTAGTCCATCATCATCAAAGATACCTG TATCACCATCACCAAAGTCTGCACCATCGCCTGATGATGAATACAATCCAGGAGCTGGTGGACATGGCGAGACACCATCATCACCATCACCAACCTCCTC ACTAAAACCCGAGGCACCAAAAACATCACCACAACCAAAAATACCAGTTATAAACCCTCACTCTCCATCATCATCCCCACCACTTGTGCTCTCAACCCCT TCACTGGTCCACTCTCCCCCACCACCAGTTCACTCTCCACCACCACCTGTCCAGTCACCCCCACCACCAGTTCACTCTCCCCCGCCACCTGTCCAGTCAC CACCACCACCACCACCAGTTCACTCTCCCCCGCCACCCGTCCAGTCACCTCCACCACCAGTTCACTCTCCACCACCACCCGTACACTCACCGCCACCACC TGTCCAGTCACCTCCACCACCAGTTCACTCTCCACCACCACCCGTACACTCACCGCCACCACCAGTTCACTCACCACCACCACCTGTCCACTCTCCGCCA CCACCAGTCCAGTCACCCCCTCCACCTGTCCACTCTCCACCTCCACCCGTACACTCACCTCCTCCTGTCCAGTCACCCCCTCCACCTGTTCACTCTCCAC CACCACCAGTACACTCACCCCCTCCTCCAGTTCACTCACCCTCTCCACCCGTACAATCCCCCCCACCACCACCAGTACACTTACCTCCTCCACCAGTACA CTCTCCACCACCACATGTTAAATCACCACCACCACCACGACCAGTCAAATCATCTCCACTTCCAATTTTCTCTCCACCACCACCAACTGTATTTCCTCAT CCTCCTCGTGCTTTTCCTCCACCACCCCCAAATGAAGATATAGTCCTTCCACCAAACCTCGGATTCCAATACGCATCGCCACCTCCACCAGTGTTCCCAG GCTACTAG
AA sequence Show only first row Show all	>Potri.004G146350.1 pacid=42795841 polypeptide=Potri.004G146350.1.p locus=Potri.004G146350 ID=Potri.004G146350.1.v4.1 annot-version=v4.1 MANPLRAFGCFFFFSLLFSSFSTFSLALTDAEASYIARRQLLTLNENSELPHEFEYEVDVKITFANQRLRRAYIGLQAWKKAIYSDPFNTTGNWVGANVC AYNGVFCAPALDDPSLSVVAGVDLNGADIAGHLPAELGLMTDVALFHINSNRFCGIIPESFSKLTLMYEFDVSNNRFVGDFPSVVLSWPSLKYLDVRFND FEGSLPPELFNKELDALFLNDNRFTSTIPETIGNSAVSVVTFANNKFTGCIPHSVGKMANLNEVIFMGNDLGGCFPAEIGLLRNVTVFDASHNGFTGILP PSFAGLKKVELLDLADNKLTGFVPENICKLPSLTNFTFSYNYFKGEAQACVPPSRKDIVLDDTSNCLSDRPKQKSARTCYPVVSRPVDCSKDKCAGGGGS SNPHPKPQPTPPTSKHEPTPSPPKSISISTPTPPSARVPTPQTAESPKPEHELPQTPVEPIRPSTPKIPLPSSPSINSSVPSSDPYNPGSGGHGETPLSP NYAPSPDSFGNSPIGHHDTPPSLSISPSSSKIPVSPSPKSAPSPDDEYNPGAGGHGETPSSPSPTSSLKPEAPKTSPQPKIPVINPHSPSSSPPLVLSTP SLVHSPPPPVHSPPPPVQSPPPPVHSPPPPVQSPPPPPPVHSPPPPVQSPPPPVHSPPPPVHSPPPPVQSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPP PPVQSPPPPVHSPPPPVHSPPPVQSPPPPVHSPPPPVHSPPPPVHSPSPPVQSPPPPPVHLPPPPVHSPPPHVKSPPPPRPVKSSPLPIFSPPPPTVFPH PPRAFPPPPPNEDIVLPPNLGFQYASPPPPVFPGY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G15880			Leucine-rich repeat (LRR) fami...		Potri.004G146350 [exp]	0	1
AT4G19650			Mitochondrial transcription te...		Potri.015G115701 [exp]	4.47	0.8161
AT3G11770			Polynucleotidyl transferase, r...		Potri.019G021900 [exp]	5.38	0.7648
AT1G05020			ENTH/ANTH/VHS superfamily prot...		Potri.002G224500 [exp]	7.07	0.8016
AT2G28230			TATA-binding related factor (T...		Potri.005G126902 [exp]	10.24	0.8051
AT1G80860		ATPLMT	ARABIDOPSIS PHOSPHOLIPID N-MET...		Potri.003G182400 [exp]	11.22	0.8078
AT3G57790			Pectin lyase-like superfamily ...		Potri.006G057100 [exp]	13.45	0.6813
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Potri.004G002400 [exp]	19.74	0.7866
AT4G18650			transcription factor-related (...		Potri.004G058200 [exp]	20.49	0.7560
AT4G30993			Calcineurin-like metallo-phosp...		Potri.018G110300 [exp]	24.00	0.7989
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Potri.011G061300 [exp]	24.91	0.8027	Pt-RAB11.12

Compare expression of checked genes

Potri.004G146350 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.