Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15900 1073 / 0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1) AT1G15240 227 / 9e-63 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G108300 [exp] 1738 / 0 AT2G15900 1117 / 0.0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1) Potri.001G183100 [exp] 282 / 3e-79 AT1G15240 512 / 1e-167 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1.2.3) Potri.003G053200 [exp] 274 / 2e-76 AT1G15240 986 / 0.0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027939 [exp] 1151 / 0 AT2G15900 1001 / 0.0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1) Lus10023847 [exp] 694 / 0 AT2G15900 606 / 0.0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1) Lus10012042 [exp] 549 / 0 AT2G15900 495 / 9e-167 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1) Lus10012043 [exp] 469 / 3e-157 AT2G15900 404 / 1e-133 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1) Lus10035877 [exp] 249 / 4e-68 AT1G15240 1026 / 0.0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1.2.3) Lus10025785 [exp] 211 / 1e-55 AT1G15240 953 / 0.0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1.2.3) Lus10036765 [exp] 59 / 1e-09 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02194 [poplar] [flax] PXA PXA domain
Representative CDS sequence Show only first row Show all	>Potri.004G146600.4 pacid=42795987 polypeptide=Potri.004G146600.4.p locus=Potri.004G146600 ID=Potri.004G146600.4.v4.1 annot-version=v4.1 ATGAAGGCTATGGAGACGGTACATGATCTGATTGAAGAAGCTAAACTTCGAACGGTTTGGTGGTGTCTTTGTATCTTTTCCGCCACTTACTTCTTATCTC ATACAAGTTCATCAATGTGGATGAATCTACCCATATCAATTCTCATTGTGTCTGCACTAAGAATTTTGTCTAATGAAGTGGAGTTCAGCTGGAAAGCACG CCGGTCAGTTCATCGACAGTCTTATTTGTCACATTTGGAGAAGAAACAGTTGTCTAAGAATGACTCACGACTTTCTTCTGTGCCACCGGCACCAAAGTGG AAGAGGAAAATTGATTCTCCAGTTGTTGAGGCTGCAATTGGTGGTTTCATCGATAAGATATTGAAGGATTTTGTGGTAGACCTATGGTATTCAGAAATTA CACCAGATAGGGAGGCGCCTGAGCTGATACGGTCGGTAATCATGGATGCTCTTGGTGAGGTATCTGGAAGGGCTAAAGAGATAAATCTTATTGACTTGCT AACTAGGGATTTAGTTGATTTAATAGGGGATCACTTAGACCTCTTTAGAAGAAATCAAGCAGCTATAGGAGCCGACGTGATGGCAACTCTTTCTACTGAA GAGAGAGATGAAAGGTTGAAACACCATCTAATGGCTTCTAAGGAGCTTCATCCTGCATTGATATCTCTCGAGAGTGAGTACAAGGTTCTTCAGCGACTGA TTGGTGGAGTTTTAGCTATAGTACTTAGACCTCGTGAAGCTCAATGCCCGCTGGTTCGGACTATCGCTCGAGAGATTGTAACTTGCTTGGTAATGCAACC TCTTATGAATCTTGCAAGCCCTGTGTATATCAATGAGGTACTTGAATTGATTTTACTTTCCATTAAAGATGATAGTCCAAAAGATACTGTTGGTGATCAA CCTGCAGAGAGTGTGCATAATGCTGACTCTACCTTGAGAAAAGATCCCTCTGTAAATAGTCAAAGGACTGGAATTGTTGACAACAAAAGAGACTATCAAG GAACAGATACAACTTTGTCTAAAATTGATGATTGCGGAGAAATGTACTTGGATTATGACTCACAACAAGACCATATGCAGCCACATCCTGCAGAGTGGGC ACGAATGCTAGAGGTGGCGACCCAGAGAAGAACGGAAATTCTTACACCTGAAAATCTGGAAAATATGTGGACGAAAGGAAGAAACTATAAAATGAAAGAG AAAAAAAAAGTTAAAGCAGGGGTTCAGCAATCAATGGCAAAGAGTTTAGTTACAAGCATTGCAACTGATTCTAATTTAGGAAAAGACATGCTGATGAATA CCAATGTAATCTTTAAAGAAATGGATGAGAAAGCTATAGGGCGCCTAACACCTAGATTGAGTCTAGATACTTTAACAAGTCATGAGAACAAAGATGGGAG ACAGTCTACTCAGGATGGTAGCCAGGAATTGTCTTTTGAAGGCGCACATGTTGGTGGTGAATTGGAGAATGCCGGCAATCTCTCTTTGAATGAAAAAAGA GGTGGACTTAAGAGATCCAATAGCACCTCTGCTCTAGAAGCCCTGCCTGATAAAAATAATGCATTTACGGGAGATGGAGGGGGATCCATTATCTCAGAAT TTTATAGCCCAGATTTTCATAGGAGTCCAGATCATGCTGTTAAGGTCTCAAACATGGTAGTTAGTAGTGAGGGACGTCACAGTCCCAAGCTGAAGTGTCG GGTCATGGGAGCATACTTTGAGAAACTTGGGTCAAAATCTTTTGCAGTTTACTCAATAGCAGTGACAGATGCAGAAAACAGAACTTGGTTTGTGAGAAGA AGATACAGGAATTTTGAGAGATTGCATAAACATCTGAAAGAGATCCCAAATTACACATTGCACTTACCTCCCAAAAGGATATTCTCATCAAGCACTGAAG ATGCTTTTGTTCAACAACGATGTATTCAGCTTGATAAATATATTCAAGATCTCATGTCTATAGCCAACGTTGCGGAGCAGCATGAAGTTTGGGATTTCTT AAGTGTTTCCTCAAAGAATTATTCTTTTGCGAAATCTTCCTCAGTCATGAGAACCCTGGCAGTCAATGTGGATGATGCTGTGGATGATATTGTGCGGCAA TTCAAAGATGTTTCAGATGGCTTTATGCGTAAAGTTGTTGGTTCAACTTCCCCACTCGACGAAACCAATTCCTCAATCTACAACAGGAACTTGTCCTGGC ATTTGGATGATGTGAATAAACATGTCTCAAGGCAGGATACTTTAGAAACTGCAAACAGCTATTCTGAAACTGAAGAATGTCATAATCAAGGAAGCTATGA CCAGAAGGGAGTTGGATCTACTGCAGAAGCCAGTGGTTGTCATTCAGTTAATGAATTGAATGCAAACGGTTTTCCTCCTCTGGTGTTCAAACATGATGAG GAGTCACGGGCCTTAGGTTTAGAGAAAAAACCTGTATTAGAGGAGAAAAGTGAAAGGATTAACCATGGCGTGTTTTCTGTAGCAAACTCTGCAATAGCTT CCAGTCATATGGATGATCCAGTTGGAATGCCACCTGAGTGGACTCCTTCTAATGTAAGTGTACCTCTGCTAAATCTAGTCGATAAGGTGTTTCAGCTTAA AAGAAGAGGCTGGCTGAGAAGACAGGTCTTTTGGATATCAAAGCAAATACTGCAGTTAATAATGGAAGATGCTATCGATGACTGGCTTTTGAGGCAAATT TACTGGCTTCGGAGGGAGGACACTATTGCTTTTGGGATTCAATGGGTGCAAGATATTCTCTGGCCAAATGGCATGTTCTTTACGAGAGCAAGGGTTGCAC AAAGCAAAGTTGACGATGACCAACTAAATCTCATACCTTTTCAGATTAGCCAACTGAGTGGCTGTAAGGTCTCTAATAAGGGTTCATTCGAGGAACAACT CGAGGCTGCTTGTAGAGCAAGTGATATCAAAAATATGCTCTTTGATGGAGCTCCTGCAACTTTAGTCAGCTTGATTGGAAATAAACAGTACAAGCGCTGT GCAAGAGACATTTTCTATTTCACTCAGTCTACTATCTGTGTGAAGCAGCTTGCATATGGAATACTTGAACTATTAGTTATATCAGTTTTCCCTGAGCTCC GGGATGTTTTGCTGGGTCTCAACGAGAAGATGCGTGCTCCACCCGCATAG
AA sequence Show only first row Show all	>Potri.004G146600.4 pacid=42795987 polypeptide=Potri.004G146600.4.p locus=Potri.004G146600 ID=Potri.004G146600.4.v4.1 annot-version=v4.1 MKAMETVHDLIEEAKLRTVWWCLCIFSATYFLSHTSSSMWMNLPISILIVSALRILSNEVEFSWKARRSVHRQSYLSHLEKKQLSKNDSRLSSVPPAPKW KRKIDSPVVEAAIGGFIDKILKDFVVDLWYSEITPDREAPELIRSVIMDALGEVSGRAKEINLIDLLTRDLVDLIGDHLDLFRRNQAAIGADVMATLSTE ERDERLKHHLMASKELHPALISLESEYKVLQRLIGGVLAIVLRPREAQCPLVRTIAREIVTCLVMQPLMNLASPVYINEVLELILLSIKDDSPKDTVGDQ PAESVHNADSTLRKDPSVNSQRTGIVDNKRDYQGTDTTLSKIDDCGEMYLDYDSQQDHMQPHPAEWARMLEVATQRRTEILTPENLENMWTKGRNYKMKE KKKVKAGVQQSMAKSLVTSIATDSNLGKDMLMNTNVIFKEMDEKAIGRLTPRLSLDTLTSHENKDGRQSTQDGSQELSFEGAHVGGELENAGNLSLNEKR GGLKRSNSTSALEALPDKNNAFTGDGGGSIISEFYSPDFHRSPDHAVKVSNMVVSSEGRHSPKLKCRVMGAYFEKLGSKSFAVYSIAVTDAENRTWFVRR RYRNFERLHKHLKEIPNYTLHLPPKRIFSSSTEDAFVQQRCIQLDKYIQDLMSIANVAEQHEVWDFLSVSSKNYSFAKSSSVMRTLAVNVDDAVDDIVRQ FKDVSDGFMRKVVGSTSPLDETNSSIYNRNLSWHLDDVNKHVSRQDTLETANSYSETEECHNQGSYDQKGVGSTAEASGCHSVNELNANGFPPLVFKHDE ESRALGLEKKPVLEEKSERINHGVFSVANSAIASSHMDDPVGMPPEWTPSNVSVPLLNLVDKVFQLKRRGWLRRQVFWISKQILQLIMEDAIDDWLLRQI YWLRREDTIAFGIQWVQDILWPNGMFFTRARVAQSKVDDDQLNLIPFQISQLSGCKVSNKGSFEEQLEAACRASDIKNMLFDGAPATLVSLIGNKQYKRC ARDIFYFTQSTICVKQLAYGILELLVISVFPELRDVLLGLNEKMRAPPA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G15900			Phox-associated domain;Phox-li...		Potri.004G146600 [exp]	0	1
AT5G16780		MDF, DOT2	MERISTEM-DEFECTIVE, DEFECTIVEL...		Potri.003G148501 [exp]	1.00	0.8636
AT3G17850			Protein kinase superfamily pro...		Potri.015G035600 [exp]	2.44	0.8481
AT5G47020			unknown protein		Potri.003G086200 [exp]	3.46	0.8287
AT3G10390		FLD	FLOWERING LOCUS D, Flavin cont...		Potri.008G035200 [exp]	4.00	0.8483
					Potri.008G119000 [exp]	7.48	0.8123
AT4G20740		EMB3131	EMBRYO DEFECTIVE 3131, Pentatr...		Potri.003G203100 [exp]	9.48	0.8224
AT3G61690			nucleotidyltransferases (.1)		Potri.002G169732 [exp]	9.48	0.8075
AT1G16540		ACI2, ABA3, SIR...	SIRTINOL RESISTANT 3, LOW OSMO...		Potri.007G066400 [exp]	10.48	0.8265	Pt-ABA3.1
AT4G02480			AAA-type ATPase family protein...		Potri.015G094100 [exp]	12.04	0.7791
AT3G22430			unknown protein		Potri.008G024500 [exp]	12.84	0.8028

Compare expression of checked genes

Potri.004G146600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.