Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11800 271 / 5e-92 unknown protein AT3G44150 267 / 3e-90 unknown protein AT2G15910 258 / 6e-85 CSL zinc finger domain-containing protein (.1.2) AT3G48630 0 / 1 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G068000 [exp] 275 / 2e-93 AT3G44150 342 / 4e-120 unknown protein Potri.006G201600 [exp] 274 / 5e-93 AT3G44150 330 / 2e-115 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021005 [exp] 292 / 9e-101 AT3G44150 274 / 1e-93 unknown protein Lus10023845 [exp] 292 / 4e-100 AT3G44150 276 / 3e-94 unknown protein Lus10029366 [exp] 265 / 2e-89 AT3G44150 328 / 1e-114 unknown protein Lus10016181 [exp] 263 / 1e-88 AT3G44150 328 / 2e-114 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G146800.2 pacid=42794396 polypeptide=Potri.004G146800.2.p locus=Potri.004G146800 ID=Potri.004G146800.2.v4.1 annot-version=v4.1 ATGATGATAAAGACCATGTTGAGGCACAAGATAGCAACACAGATGATAGTTAAAGTGATGGTGATGTTGATGATGATGATGATGATGATGATTGCTATAA ATGCTGCTGATACCAATGAAGTTTTCGACCCTTGTTCAGATGCTATGGTACAAAAGTTCGATGGTTTCACATTCGGTCTAGCATTTTCAGATAAGGATTC TTTCTTTTCCAATCAGGTTCAACTTTCTCCCTGTGATAGTCGTCTAGCCCTGAGTAAAAAAGCACAGCTCGCTGTGTTTAGGCCTCAGGTTGATGAGATT TCCCTGCTTACCATCAACAGCAGTCCTTCCGACCCGGGCGCGCCTGGACCGCTCGGTAGCTATATGGTAGCATTTGCTGGGAGGAAGCATGCAGCACGAT CATTTCCAGTGATGATTTCTGACAATAATACGATCATCACCAGTTTTACTTTGGTCCTTGAATTCCAGAAGGGTACCCTTCAAACCTTGTATTGGAAGAA ATTTGGATGCCAATCATGCTCCAAGGACTTTGTTTGCCTCGGTGGTGAAGACTGTGCATTACCAATCTCAAAGTGTAAGAGTAACGGTGGTGCTCATGAT TGTAATCTGAGCATACAATTAACGTTCTCAGGCACTGACAAGAATCTTCAAGCGCTTAATTCGTGGTATGAGGTGTCTAATCTCCGGCAGTACTCGCTGT ATGGTCTATATTCCAACCTTCGGGACTCTGTCGTTGGCCACTTTGACGGGCTCTTTTAA
AA sequence Show only first row Show all	>Potri.004G146800.2 pacid=42794396 polypeptide=Potri.004G146800.2.p locus=Potri.004G146800 ID=Potri.004G146800.2.v4.1 annot-version=v4.1 MMIKTMLRHKIATQMIVKVMVMLMMMMMMMIAINAADTNEVFDPCSDAMVQKFDGFTFGLAFSDKDSFFSNQVQLSPCDSRLALSKKAQLAVFRPQVDEI SLLTINSSPSDPGAPGPLGSYMVAFAGRKHAARSFPVMISDNNTIITSFTLVLEFQKGTLQTLYWKKFGCQSCSKDFVCLGGEDCALPISKCKSNGGAHD CNLSIQLTFSGTDKNLQALNSWYEVSNLRQYSLYGLYSNLRDSVVGHFDGLF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G11800			unknown protein		Potri.004G146800 [exp]	0	1
					Potri.019G129532 [exp]	5.47	0.7006
AT2G14110			Haloacid dehalogenase-like hyd...		Potri.017G043900 [exp]	7.07	0.7083
AT1G71691			GDSL-like Lipase/Acylhydrolase...		Potri.010G137100 [exp]	15.36	0.6992
AT4G27720			Major facilitator superfamily ...		Potri.012G020500 [exp]	21.35	0.7010
AT4G34640		ERG9, SQS1	squalene synthase 1 (.1)		Potri.009G123100 [exp]	21.49	0.6877	SQS1.2
AT5G44400			FAD-binding Berberine family p...		Potri.011G161600 [exp]	24.55	0.6817
AT1G55580	GRAS	SCL18, LAS	SCARECROW-LIKE 18, Lateral Sup...		Potri.012G020200 [exp]	28.89	0.6905	Pt-LAS.3
AT1G78950		ATLUP3	Terpenoid cyclases family prot...		Potri.014G002400 [exp]	32.83	0.5893
AT3G52990			Pyruvate kinase family protein...		Potri.006G117400 [exp]	58.31	0.6401
AT4G32140			EamA-like transporter family (...		Potri.006G257000 [exp]	62.20	0.5926

Compare expression of checked genes

Potri.004G146800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.