Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18990 354 / 4e-121 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) AT1G49480 240 / 4e-78 B3 REM19, RTV1 related to vernalization1 1 (.1) AT4G01580 78 / 1e-16 B3 AP2/B3-like transcriptional factor family protein (.1) AT3G18960 72 / 1e-14 B3 AP2/B3-like transcriptional factor family protein (.1) AT1G49475 67 / 6e-13 B3 AP2/B3-like transcriptional factor family protein (.1) AT3G17010 53 / 1e-07 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G33280 53 / 1e-07 B3 REM16 AP2/B3-like transcriptional factor family protein (.1) AT5G18090 48 / 5e-06 B3 AP2/B3-like transcriptional factor family protein (.1) AT5G18000 48 / 5e-06 B3 VDD VERDANDI (.1) AT4G31690 44 / 0.0002 B3 REM9 Transcriptional factor B3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G108500 [exp] 652 / 0 AT3G18990 395 / 2e-137 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147000 [exp] 255 / 1e-81 AT3G18990 258 / 3e-83 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147200 [exp] 167 / 8e-48 AT1G49480 110 / 5e-28 related to vernalization1 1 (.1) Potri.010G191500 [exp] 156 / 9e-44 AT3G18990 189 / 5e-57 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.002G129800 [exp] 94 / 8e-21 AT4G33280 159 / 9e-45 AP2/B3-like transcriptional factor family protein (.1) Potri.004G230100 [exp] 91 / 7e-20 AT3G18990 161 / 1e-44 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.002G129900 [exp] 74 / 2e-14 AT4G33280 237 / 9e-76 AP2/B3-like transcriptional factor family protein (.1) Potri.014G057101 [exp] 71 / 6e-14 AT3G18990 76 / 5e-16 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.014G036800 [exp] 69 / 1e-12 AT3G18990 92 / 3e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012041 [exp] 423 / 5e-148 AT3G18990 388 / 8e-135 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10027940 [exp] 387 / 8e-134 AT3G18990 371 / 4e-128 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10023844 [exp] 165 / 3e-49 AT3G18990 179 / 1e-55 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10021006 [exp] 157 / 6e-47 AT1G49480 138 / 5e-42 related to vernalization1 1 (.1) Lus10009688 [exp] 91 / 3e-20 AT3G18990 113 / 2e-28 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10036045 [exp] 84 / 8e-18 AT3G18990 110 / 2e-27 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10002425 [exp] 76 / 7e-16 AT4G01580 85 / 1e-20 AP2/B3-like transcriptional factor family protein (.1) Lus10035637 [exp] 76 / 1e-14 AT3G18990 91 / 9e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10021007 [exp] 75 / 1e-14 AT3G18990 87 / 4e-19 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10010759 [exp] 72 / 1e-13 AT3G18990 91 / 1e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [poplar] [flax] DNA_b-psBarrel PF02362 [poplar] [flax] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Potri.004G146900.3 pacid=42793792 polypeptide=Potri.004G146900.3.p locus=Potri.004G146900 ID=Potri.004G146900.3.v4.1 annot-version=v4.1 ATGGGAACAAAATATTTGATTCTCCTTTGGGGAAAATGGAGCCTAACTTGGTTTGGTTTTCTGCAGAGGATCCCAGATAATTTTGTCAAGAAATTTGGAC ATGACTTATTGGGTTTTGCGAGACTCATTGTTCCCGGTGGTCATGTGTCTCGCATAGGATTAATAAAAGCTGATGAAAAATTATGGTTTCATGATGGTTG GCAGCAATTTGTTGAACGCTTCGCTATACACATTGGATACTTTTTGATCTTTCAATATGAAGGGAATGCAATTTTTAATGTTCATATATTCAATTTGCCC ACTTCTGAGATAAATTATCACTCCAACTCTCTTAGTGGGAAAATATATCTTGCATTTGAAGAATTGGAAGATGATGACAGTGCTGCAAGCTCAGGCATCC CCACCACACAACTGATAGTCAACAAAAGTTACAATCCTCCTGCCTTGCAGAATTTGCTCAGTGGATCTAAACTTAATAATTGCTTAAATTGGGGTGGTGA AGAGAATATGCACTTAACAAAGAGTGCTAATGTTTCACAAGTGGCCAATGAATCGGCACGAAATGTATTTGCTCAATACAACGAGCATAAGAATTCTCAA GAAGAAGTGAAACTCTACAGCCCAGATGGAGAAACACCAAAACTGAAAAAACGTGGAAGGAAAAGGCTGAAAGTTGATCCCAATGAGCAGCAGCTGTCAT CTCCAAACGAAGATGATGGTGAAATGAGCTTTAGATTTTATGAAAGTGCTTCTGCAAGAAAGAGAACTGTCACTGCTGAGGAACGAGAAAGAGCAATGAA TGCAGCTAAAGCATATGCACCTGATAATCCTTATTGTAGGGTTGTCCTACGACCATCATACTTATACAGGGGTTGCATTATGTATTTGCCATCTGGCTTT GCAGAGAAGAATCTAAATGGACTTTCGGGGTTTATGAAACTTCAGTTACCTGATGGGAAACAGTGGCCAGTTCGTTGCCTTTACAGAGGAGGCAGAGCTA AATTTAGCCAGGGATGGTATGAATTCACGTTGGAAAATAATTTAGGGGAAGGTGATGTGTGTGTCTTCGAGCTGCTGAAATCCAGGGATGTCGTGCTGAA AGTTACAGTATTCCGAGTTCTCGAAGATGGTGGACTTATGAACCATCCTTAA
AA sequence Show only first row Show all	>Potri.004G146900.3 pacid=42793792 polypeptide=Potri.004G146900.3.p locus=Potri.004G146900 ID=Potri.004G146900.3.v4.1 annot-version=v4.1 MGTKYLILLWGKWSLTWFGFLQRIPDNFVKKFGHDLLGFARLIVPGGHVSRIGLIKADEKLWFHDGWQQFVERFAIHIGYFLIFQYEGNAIFNVHIFNLP TSEINYHSNSLSGKIYLAFEELEDDDSAASSGIPTTQLIVNKSYNPPALQNLLSGSKLNNCLNWGGEENMHLTKSANVSQVANESARNVFAQYNEHKNSQ EEVKLYSPDGETPKLKKRGRKRLKVDPNEQQLSSPNEDDGEMSFRFYESASARKRTVTAEERERAMNAAKAYAPDNPYCRVVLRPSYLYRGCIMYLPSGF AEKNLNGLSGFMKLQLPDGKQWPVRCLYRGGRAKFSQGWYEFTLENNLGEGDVCVFELLKSRDVVLKVTVFRVLEDGGLMNHP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Potri.004G146900 [exp]	0	1
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Potri.009G108500 [exp]	9.38	0.7046
AT4G15890			binding (.1)		Potri.010G013300 [exp]	10.95	0.6740
AT3G05900			neurofilament protein-related ...		Potri.013G001150 [exp]	45.89	0.6424
AT5G06750			Protein phosphatase 2C family ...		Potri.006G192600 [exp]	46.19	0.6549
AT4G00620		EMB3127	EMBRYO DEFECTIVE 3127, Amino a...		Potri.014G080701 [exp]	53.66	0.6547
AT1G15400			unknown protein		Potri.003G062200 [exp]	58.60	0.6513
AT4G28600		NPGR2	no pollen germination related ...		Potri.008G169500 [exp]	91.26	0.5597	NPGR2.2
AT3G06660			PAPA-1-like family protein / z...		Potri.008G106200 [exp]	109.70	0.5613
AT2G27040		OCP11, AGO4	OVEREXPRESSOR OF CATIONIC PERO...		Potri.001G219700 [exp]	156.31	0.5726	AGO903,AGO4.1
					Potri.015G068850 [exp]	171.75	0.5938

Compare expression of checked genes

Potri.004G146900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.