Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31940 352 / 1e-119 CYP82C4 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) AT4G31950 335 / 4e-113 CYP82C3 "cytochrome P450, family 82, subfamily C, polypeptide 3", cytochrome P450, family 82, subfamily C, polypeptide 3 (.1) AT4G31970 328 / 2e-110 CYP82C2, JAH1 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) AT3G25180 285 / 1e-93 CYP82G1 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2) AT2G25160 280 / 2e-91 CYP82F1 "cytochrome P450, family 82, subfamily F, polypeptide 1", cytochrome P450, family 82, subfamily F, polypeptide 1 (.1) AT1G66540 220 / 1e-70 Cytochrome P450 superfamily protein (.1.2) AT4G37360 223 / 2e-69 CYP81D2 "cytochrome P450, family 81, subfamily D, polypeptide 2", cytochrome P450, family 81, subfamily D, polypeptide 2 (.1) AT4G37370 221 / 7e-69 CYP81D8 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) AT5G07990 217 / 3e-67 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT4G37320 209 / 1e-64 CYP81D5 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G108600 [exp] 433 / 5e-152 AT4G31940 555 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037500 [exp] 370 / 2e-126 AT4G31940 717 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037300 [exp] 350 / 6e-119 AT4G31940 629 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.016G008500 [exp] 340 / 8e-115 AT4G31940 499 / 2e-173 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.004G106600 [exp] 331 / 1e-111 AT3G25180 514 / 1e-179 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2) Potri.013G125300 [exp] 331 / 2e-111 AT3G25180 522 / 0.0 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2) Potri.014G037800 [exp] 327 / 5e-110 AT4G31940 495 / 9e-172 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.001G334700 [exp] 325 / 4e-109 AT4G31970 459 / 1e-157 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) Potri.014G037700 [exp] 325 / 6e-109 AT4G31940 508 / 1e-176 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032745 [exp] 342 / 1e-115 AT4G31940 571 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10007837 [exp] 337 / 9e-114 AT4G31940 575 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10025902 [exp] 312 / 5e-104 AT4G31940 449 / 1e-153 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10038200 [exp] 308 / 1e-102 AT4G31940 451 / 2e-154 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10032743 [exp] 305 / 5e-101 AT4G31940 460 / 1e-157 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10025901 [exp] 302 / 9e-100 AT4G31940 426 / 2e-144 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10035635 [exp] 298 / 1e-98 AT4G31940 470 / 8e-162 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10011657 [exp] 307 / 3e-98 AT4G31940 479 / 3e-160 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10038203 [exp] 286 / 1e-93 AT3G25180 495 / 9e-172 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2) Lus10011658 [exp] 284 / 4e-93 AT4G31940 510 / 9e-178 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.004G147600.2 pacid=42794739 polypeptide=Potri.004G147600.2.p locus=Potri.004G147600 ID=Potri.004G147600.2.v4.1 annot-version=v4.1 ATGAAGAGGACAGCAACGGAGATAGACTGTGTGTTTAGTAGCTGGGTGGAGGATCATCGACGAAACAGGCTCAATGGAAGCATCAACGAGGAGGAGAGAG ATTTCATTCATGTTATGCTTTCTAACTTGGAAGACGGCAAGATTTCTGCTGTTGACACTGATACTGCAATTAAGGGCACTTGCTTGAGCCTCATTTTGGG CGGCCACGACACGACATTTGTGACTCTTACATGGGCACTATCTTTGATATTGAACAACCGCGAAGTTCTTGAAAAGGCACAAGATGAGCTTGACATTCAA GTAGGAAAGCACCGGCAAGTTGACGAGACAGACATAAAGAACCTTGTATACTTACAAGCCATTGTCAAGGAAACAATGAGACTATACCCTGCTGCCCCGC TTTCAGCACCAAGGCAAGCCATGGAGGATTGCACGGTAGCTGGCTTCCACATCCCAGCGGGCACACGCCTTTTGGTTAACCTGTGGAAGTTGCACCGTGA TCCTAACATTTGGTCTAACCCATTGGAATTTCAGCCTGAGAGGTTCCTAAAGGAGCATGCCAATCTGGATGTGAGGGGTCAAGATTTTGAATACGTACCA TTTGGGTCTGGAAGAAGAATGTGCCCAGGGATTTCCTTGGCGCTCCAGGTTTTGCACTTGACACTGGCTCGACTGCTTCATGGTTTTGAAATGGGGACAG TTTCAGACGCTCTAATCGATATGAGTGAAGGCCCTGGAATCACTATCCCCAAGGAAACACCATTGGAGGTCATCCTCCGCCCAAGGCTACACTCAAGTCT ATATGAATGTTAA
AA sequence Show only first row Show all	>Potri.004G147600.2 pacid=42794739 polypeptide=Potri.004G147600.2.p locus=Potri.004G147600 ID=Potri.004G147600.2.v4.1 annot-version=v4.1 MKRTATEIDCVFSSWVEDHRRNRLNGSINEEERDFIHVMLSNLEDGKISAVDTDTAIKGTCLSLILGGHDTTFVTLTWALSLILNNREVLEKAQDELDIQ VGKHRQVDETDIKNLVYLQAIVKETMRLYPAAPLSAPRQAMEDCTVAGFHIPAGTRLLVNLWKLHRDPNIWSNPLEFQPERFLKEHANLDVRGQDFEYVP FGSGRRMCPGISLALQVLHLTLARLLHGFEMGTVSDALIDMSEGPGITIPKETPLEVILRPRLHSSLYEC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Potri.004G147600 [exp]	0	1
AT3G27170		ATCLC-B, CLC-B	chloride channel B (.1)		Potri.001G331700 [exp]	7.87	0.9574	CLC.5
AT4G39110			Malectin/receptor-like protein...		Potri.004G158700 [exp]	11.83	0.9310
AT4G30130			Protein of unknown function (D...		Potri.001G065345 [exp]	12.68	0.9595
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Potri.019G004500 [exp]	12.72	0.9704	QLEG.3
AT3G13750		BGAL1	beta-galactosidase 1, beta gal...		Potri.003G038500 [exp]	13.41	0.9631	BGAL1.2
AT1G24030			Protein kinase superfamily pro...		Potri.019G030600 [exp]	22.02	0.9414
AT2G17880			Chaperone DnaJ-domain superfam...		Potri.009G131800 [exp]	24.24	0.9446
AT1G78980		SRF5	STRUBBELIG-receptor family 5 (...		Potri.014G001200 [exp]	24.95	0.9650
AT5G63520			unknown protein		Potri.012G100600 [exp]	28.33	0.9630
AT3G49940	AS2	LBD38	LOB domain-containing protein ...		Potri.007G053600 [exp]	28.70	0.9199	LBD37.1

Compare expression of checked genes

Potri.004G147600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.