Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15630 736 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G01110 330 / 4e-103 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G05670 307 / 2e-94 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT5G39710 303 / 4e-93 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G09820 291 / 7e-90 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G55840 295 / 3e-87 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G65560 289 / 3e-86 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 280 / 2e-85 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT2G02150 280 / 5e-84 EMB2794 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62910 273 / 1e-82 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G276500 [exp] 366 / 8e-117 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G105600 [exp] 327 / 8e-102 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G035700 [exp] 309 / 3e-95 AT1G05670 922 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Potri.011G003700 [exp] 302 / 1e-93 AT1G11710 681 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G131600 [exp] 297 / 1e-92 AT4G11690 632 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.004G074500 [exp] 291 / 3e-90 AT1G62930 478 / 1e-162 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G032600 [exp] 291 / 1e-89 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G014500 [exp] 293 / 6e-89 AT1G09820 696 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.005G046000 [exp] 290 / 2e-88 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012037 [exp] 873 / 0 AT2G15630 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007468 [exp] 330 / 2e-103 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027916 [exp] 312 / 4e-96 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 305 / 1e-93 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 305 / 9e-92 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036020 [exp] 291 / 2e-87 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013283 [exp] 286 / 2e-87 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10023863 [exp] 287 / 3e-86 AT5G12100 728 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10013841 [exp] 284 / 4e-84 AT5G65560 868 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026558 [exp] 281 / 2e-83 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.004G147700.1 pacid=42796184 polypeptide=Potri.004G147700.1.p locus=Potri.004G147700 ID=Potri.004G147700.1.v4.1 annot-version=v4.1 ATGAAATCTCACAAACTGCTCAACTATCAACTCCTCAAACACAACCACCTGAAAACCGGCAACACCATTTCCCACAACACCAAAATACATCGCTCCCATG TAGTATTTTTCTCAACAACACCAAATCCAAACACTAATAATCCACAAAATCAAACTCTGTCTCCAAGCATTCCCACAGAGCTAACCCCACGAACAATACT TGATTTGATACATTCTTCTCAGTGGCATTTTATCAAACACCTTGCACACAAAATAACTCCTTCGCTAATTTCAACTGCTCTCACTAGTCTCCATAAAACC CCTGATTTAGCCTTCCAGTTTGTAACCCATATTGGATTCGGTGATCTTGATATCAAAAGCAAGTGTCTTGCTATGGCGGTAATCTCTCACGCACCAAACT CAAAACCCTCGCTGCAGCTCTTGAAAGAAACTATTAACAGTGGGGTTTATAGTATCAGGGAGGTTTTCAATGAGCTGGGAGTTGCAAGGGGCGTGTTAGG AATTAAAACTTACGTGCTTTATGATTTGTTGATAAGGGCTTGTTGTGAATTGAAGAGGGGTGATGATGCATTTGAGTGTTTCGATATGATGAAGGGAAAG GGTGTAATTCCTCACGTTCACGCATGTAATGATATGTTGAGTTTGTTTTTAAAGTCAAATAGGACGGAGAAGGCGTGGGTTCTGTATGCTGAGATGTTTA GGATGAGGATTAAATCGAGTGTTGTTACGTTTAATATAATGATTAATGTGTTATGCAAGGAAGGGAAGTTGAAGAAGGCAAAGGAGTTTATTGGGTTAAT GGAGGCCTTGGGGATTAAACCTAATGTTGTTACATATAATACGATAATTCATGGATATTGTTCAAGAGGAAGAGTTGAAGGTGCTCGTATGATTTTTGAT TTAATGAAATGTAGGGGGGTTAAACCAGATTCGTACACGTATGGTTCATTTATTAGTGGGATGTGCAAGGAAGGAAAACTTGAGGAAGCATCTGGGATGC TTGAGAAGATGAAAGAAATTGGGTTGCGTCCAACTGCTGTGACTTATAATACTTTGATTGATGGGTATTGCAATAAAGGGAATTTGGAGATGGCTTTTGA CTATAGGGATAAGATGGTGAGGGAGGGTTTAATGCCAACCGTTTCAACTTATAATATGTTGATTCATGCATTGTTTTTAGATTGTAAGATGGATGAAGCT GATGGTATTATAAAAGAGATGAGCGAGAAGGGGTTGGTTCCTGATTCTGTAACTTATAACATACTGATAAATGGATATTGCAGATGTGGGAATGTAAAGA AAGCATTTACCCTCCATGATGAAATGATAAGCAAAGGGATTCAGCCTACCCGTGTAACATATACTTCGCTGATTTATGTTTTGAGTAAACGGGGTAGAAT GAAACAGGCTGATGACTTGTTTGAAAAGATAGTCCGGAAAGGCATTTTCCCAGATCTCATAATGTTCAATGCTTTGATTGACGGTCACTGTGCAAATGGG AATATGGACCGTGCATTTGCAATGCTGAAGGAGATGGATCAAATGAAAGTTGTTCCTGACGAAGTAACTTTCAATACCCTAATGCAAGGACGTTGCAGGG AGGGAAAAGTTGAAGCAGCTCGTGAGCTTATTGAAGAGATGAAGAGCAGGGGGATTAAACCTGACCATATTAGTTATAATACTCTAATAAGTGGGTATAG TAAGAGAGGTGATATGAAGGATGCCTTCAGAGTTCGAGATGAAATGTTGAGTATAGGATTCAACCCTACACTTCTCACCTACAATGCCCTGATACAAGGT TTATGCAAAAACGAGGAAGGAGATCATGCTGAACAGCTCCTTAAAGAAATGATTAGCAAAGGCATTACTCCTAATGATAACACTTATTTATCTTTGATCG AGGGGATAGGGAATGTTGAGGAATTTTTGGGAATCAGCAATCCATAG
AA sequence Show only first row Show all	>Potri.004G147700.1 pacid=42796184 polypeptide=Potri.004G147700.1.p locus=Potri.004G147700 ID=Potri.004G147700.1.v4.1 annot-version=v4.1 MKSHKLLNYQLLKHNHLKTGNTISHNTKIHRSHVVFFSTTPNPNTNNPQNQTLSPSIPTELTPRTILDLIHSSQWHFIKHLAHKITPSLISTALTSLHKT PDLAFQFVTHIGFGDLDIKSKCLAMAVISHAPNSKPSLQLLKETINSGVYSIREVFNELGVARGVLGIKTYVLYDLLIRACCELKRGDDAFECFDMMKGK GVIPHVHACNDMLSLFLKSNRTEKAWVLYAEMFRMRIKSSVVTFNIMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYCSRGRVEGARMIFD LMKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAVTYNTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEA DGIIKEMSEKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKRGRMKQADDLFEKIVRKGIFPDLIMFNALIDGHCANG NMDRAFAMLKEMDQMKVVPDEVTFNTLMQGRCREGKVEAARELIEEMKSRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMLSIGFNPTLLTYNALIQG LCKNEEGDHAEQLLKEMISKGITPNDNTYLSLIEGIGNVEEFLGISNP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G15630			Pentatricopeptide repeat (PPR)...		Potri.004G147700 [exp]	0	1
AT1G05670			Pentatricopeptide repeat (PPR-...		Potri.010G035700 [exp]	1.00	0.9572
AT5G46100			Pentatricopeptide repeat (PPR)...		Potri.011G057900 [exp]	1.73	0.9535
AT4G10620			P-loop containing nucleoside t...		Potri.001G010400 [exp]	2.00	0.9515
AT1G03540			Pentatricopeptide repeat (PPR-...		Potri.013G145000 [exp]	2.00	0.9562
AT2G44880			Pentatricopeptide repeat (PPR-...		Potri.014G046200 [exp]	3.16	0.9479
AT2G17525			Pentatricopeptide repeat (PPR)...		Potri.005G102400 [exp]	3.60	0.9344
AT2G03880		REME1	required for efficiency of mit...		Potri.004G208000 [exp]	3.74	0.9459
AT3G22670			Pentatricopeptide repeat (PPR)...		Potri.010G083800 [exp]	4.24	0.9437
AT2G29760		OTP81	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.009G044700 [exp]	5.83	0.9168
AT5G14080			Tetratricopeptide repeat (TPR)...		Potri.001G326800 [exp]	5.91	0.9149

Compare expression of checked genes

Potri.004G147700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.