Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18950 539 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT2G26490 538 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT1G49450 519 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT4G34380 512 / 5e-180 Transducin/WD40 repeat-like superfamily protein (.1) AT3G50390 481 / 6e-168 Transducin/WD40 repeat-like superfamily protein (.1) AT1G47610 438 / 8e-153 Transducin/WD40 repeat-like superfamily protein (.1) AT1G24130 277 / 4e-89 Transducin/WD40 repeat-like superfamily protein (.1) AT1G24530 258 / 2e-81 Transducin/WD40 repeat-like superfamily protein (.1) AT3G51930 253 / 9e-80 Transducin/WD40 repeat-like superfamily protein (.1) AT5G50120 242 / 8e-76 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G109500 [exp] 799 / 0 AT3G18950 555 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G038400 [exp] 531 / 0 AT2G26490 631 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G130400 [exp] 520 / 0 AT2G26490 632 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G131100 [exp] 512 / 2e-179 AT3G50390 535 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G035100 [exp] 505 / 9e-178 AT3G50390 514 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G070900 [exp] 275 / 2e-88 AT5G50120 398 / 2e-137 Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G239600 [exp] 270 / 3e-85 AT3G50390 280 / 4e-89 Transducin/WD40 repeat-like superfamily protein (.1) Potri.003G202700 [exp] 265 / 2e-84 AT3G51930 531 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G076000 [exp] 265 / 2e-84 AT5G50120 417 / 5e-145 Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011655 [exp] 535 / 0 AT2G26490 604 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10016289 [exp] 512 / 1e-180 AT2G26490 597 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10012036 [exp] 505 / 2e-177 AT3G18950 463 / 1e-160 Transducin/WD40 repeat-like superfamily protein (.1) Lus10022475 [exp] 500 / 5e-176 AT3G50390 536 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10032868 [exp] 497 / 8e-175 AT2G26490 580 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10027944 [exp] 486 / 1e-170 AT3G18950 459 / 7e-160 Transducin/WD40 repeat-like superfamily protein (.1) Lus10021014 [exp] 454 / 1e-157 AT3G18950 423 / 3e-145 Transducin/WD40 repeat-like superfamily protein (.1) Lus10023836 [exp] 433 / 3e-148 AT3G18950 431 / 3e-147 Transducin/WD40 repeat-like superfamily protein (.1) Lus10016779 [exp] 396 / 2e-133 AT3G50390 435 / 2e-148 Transducin/WD40 repeat-like superfamily protein (.1) Lus10034117 [exp] 263 / 2e-83 AT5G50120 391 / 1e-134 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.004G148400.1 pacid=42793982 polypeptide=Potri.004G148400.1.p locus=Potri.004G148400 ID=Potri.004G148400.1.v4.1 annot-version=v4.1 ATGAAACACGAAAGAGGCATCAGCACCATGGTTGCAGAACTCTCAATACAGCGACCAACTTTCGGTGCTCTCTTGCATTCCGATCCTGCAATTTTTAATC AAGATGATGATGAATCAAGCAACAAAAACAGCCCAACTTCAACCAATATGAGTCCTAGATATTACAGCAGTTTCACCCCACCAAGTGGTGATCTCTCTCC TTACCTCTCCCCATGGAGCCAACTGTCTCCATACACTAAATCTCCTTGGATAATACCATCTCCAATCAGCCATAAGCTCTCTAAAAATGGCCTTGTTGGA TCAATTTCACGTGAAGAAGGTCATGTTTATTCTATAGCTGCTTCTGGTGATTTTCTATACACTGGCTCCGATAGCAAGAACGTACGTGTATGGAAGAATT TGAAGGAGTTTTCAGGGTTTAAATCCAACAGTGGATTGGTTAAGGCCATTGTTGTGTGCGGTGAAAAGATTTTCACTTGTCATCAAGATGGCAAGATCAG AGTCTGGACGATATCTACCAGAAACCCAAGTGTTTACAGACGAGTTGGGACCTTGCCAACTCTTAAAGATTGCGTCAAAGGCTCTTTGAATCCCAAGAAC TACGTAGAAGTTCGTAGACATCGCAATGTTTTACGTATCAAGCATTTCGACGCAGTTTCTTGCCTAAGCCTGAATCAAGATCAGGGTTTATTATACTCAG GATCCTGGGACAAAACCCTAAAAGTTTGGCGAGTTTCAGACTATAAATGCCTTGAATCAATCAACGCCCACGACGATGCTATAAATTCAGTTGTCACCGG GTTCGACTCTTTGGTGTTTACCGGCTCAGCTGATGGAACAGTGAAAGCATGGAGAAGGGAGCTTCAAGGGAGAGGAACTCGGCATTTTTTGGTTCAAACA CTGTTAAAACATGAAAACGCCGTGACAGCGCTCTCGGTAAATCAAGAATCAGCTGTAATTTACTGTGGTTCATCCGATGGGTTGGTAAATTTTTGGGAAC GTGAAAAGCTCTTGTCACATGGTGGGGTCCTCAGGGGCCACAAAATGGCCGTCCTTTGCTTGGCGTCGGCTGGTAATCTGGTGTTTAGTGGGTCCGCTGA TAAAAGTATTTGTGTGTGGCGTAGGGAAGGTGGCGGCGTCCATACTTGCTTGGCAGTTTTGACTGGTCATGGTGGGCCAGTGAAATGCCTAGCCGTTGTA GAAGATCAAGAATCTGACGAAGGAGATCAGCGGTGGATAGTGTATAGTGGGAGTTTAGACAAGTCTGTTAAGGTTTGGTGCGTGACAGAGAACGCGCCAA AGTGGAGGGAGTATCCATCACCTAGGTTGGGCTTCTCTTCACATACCCAAAACAAAAGACAATTTCACGGGTAG
AA sequence Show only first row Show all	>Potri.004G148400.1 pacid=42793982 polypeptide=Potri.004G148400.1.p locus=Potri.004G148400 ID=Potri.004G148400.1.v4.1 annot-version=v4.1 MKHERGISTMVAELSIQRPTFGALLHSDPAIFNQDDDESSNKNSPTSTNMSPRYYSSFTPPSGDLSPYLSPWSQLSPYTKSPWIIPSPISHKLSKNGLVG SISREEGHVYSIAASGDFLYTGSDSKNVRVWKNLKEFSGFKSNSGLVKAIVVCGEKIFTCHQDGKIRVWTISTRNPSVYRRVGTLPTLKDCVKGSLNPKN YVEVRRHRNVLRIKHFDAVSCLSLNQDQGLLYSGSWDKTLKVWRVSDYKCLESINAHDDAINSVVTGFDSLVFTGSADGTVKAWRRELQGRGTRHFLVQT LLKHENAVTALSVNQESAVIYCGSSDGLVNFWEREKLLSHGGVLRGHKMAVLCLASAGNLVFSGSADKSICVWRREGGGVHTCLAVLTGHGGPVKCLAVV EDQESDEGDQRWIVYSGSLDKSVKVWCVTENAPKWREYPSPRLGFSSHTQNKRQFHG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G18950			Transducin/WD40 repeat-like su...		Potri.004G148400 [exp]	0	1
AT5G16340			AMP-dependent synthetase and l...		Potri.013G096200 [exp]	2.44	0.9876
AT3G17860	ZIM	TIFY6B, JAI3, J...	JASMONATE-INSENSITIVE 3, jasmo...		Potri.012G044900 [exp]	4.47	0.9634
AT2G15020			unknown protein		Potri.009G094100 [exp]	4.47	0.9827
AT1G64500			Glutaredoxin family protein (....		Potri.001G088900 [exp]	5.00	0.9765
AT1G64500			Glutaredoxin family protein (....		Potri.003G141800 [exp]	6.48	0.9751
AT1G79160			unknown protein		Potri.011G153600 [exp]	6.92	0.9610
AT4G16490			ARM repeat superfamily protein...		Potri.006G015100 [exp]	7.34	0.9538
AT5G12180		CPK17	calcium-dependent protein kina...		Potri.009G069200 [exp]	9.74	0.9581	CPK17.1
AT5G24120		ATSIG5, SIG5, S...	SIGMA FACTOR 5, sigma factor E...		Potri.012G031100 [exp]	9.94	0.9638	Pt-SIGE.3
AT3G52740			unknown protein		Potri.004G203000 [exp]	10.24	0.9712

Compare expression of checked genes

Potri.004G148400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.