Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42650 443 / 1e-152 CYP74A, AOS, DDE2 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) AT4G15440 211 / 3e-64 CYP74B2, HPL1 hydroperoxide lyase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G148900 [exp] 838 / 0 AT5G42650 499 / 2e-174 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.009G109700 [exp] 676 / 0 AT5G42650 479 / 2e-166 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.004G149000 [exp] 676 / 0 AT5G42650 492 / 3e-171 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.014G038700 [exp] 475 / 5e-165 AT5G42650 658 / 0.0 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.002G130700 [exp] 469 / 8e-163 AT5G42650 693 / 0.0 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.014G155800 [exp] 326 / 3e-107 AT4G15440 507 / 6e-179 hydroperoxide lyase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021015 [exp] 518 / 0 AT5G42650 468 / 7e-162 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Lus10021019 [exp] 514 / 0 AT5G42650 474 / 6e-164 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Lus10018791 [exp] 407 / 2e-138 AT5G42650 615 / 0.0 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Lus10030029 [exp] 304 / 7e-99 AT4G15440 481 / 3e-169 hydroperoxide lyase 1 (.1) Lus10031540 [exp] 300 / 7e-97 AT4G15440 467 / 3e-163 hydroperoxide lyase 1 (.1) Lus10015138 [exp] 283 / 1e-90 AT4G15440 378 / 2e-128 hydroperoxide lyase 1 (.1) Lus10035289 [exp] 271 / 6e-86 AT4G15440 443 / 2e-154 hydroperoxide lyase 1 (.1) Lus10030033 [exp] 270 / 2e-85 AT4G15440 442 / 7e-154 hydroperoxide lyase 1 (.1) Lus10030032 [exp] 259 / 1e-81 AT4G15440 423 / 2e-146 hydroperoxide lyase 1 (.1) Lus10035295 [exp] 112 / 4e-28 AT4G15440 253 / 4e-83 hydroperoxide lyase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.004G148600.2 pacid=42795216 polypeptide=Potri.004G148600.2.p locus=Potri.004G148600 ID=Potri.004G148600.2.v4.1 annot-version=v4.1 ATGTTTCCTCCTCAATCAGCAGTCCCATTGAAACCTATACCTGGTAGCTATGGCCTCCCTTTCTTTGGTGCCATCAAAGATCGTCTAGACTATTTCTATA ACCAAGGGAAAGATGAGTTCTTCAGCTCCCGTGTTGAAAAATACCAATCCACAGTTTTCAAAACCAATATGCCTCCTGGCCCTTTTATTGCTCAAAATCC GAAAGTCATTGCTGTACTTGATGCAATATCATTCCCAATCCTCTTTGACACTTCCAAAATTGAAAAATTTAACGTTCTTGATGGCACTTACTTACCCTCC TTGTCTTTCACTGGAGGATACCGAGTTTGTGCGTATCTTGATCCTTCTGAGCCTAATCACACCTCTCTCAAATCCTTTTTCATGTCTGTCCTCGCATCCA AGCACAAGGACTTCGTCCCCCTTTTTAGGACTTGCTTGTCTCAAATGTTCATCGACATTGAAGATGAAATGGGTTCTAAAAGGACAGCAAATTTCAATGA CTCCAGTGATGCAATGTCTTTCAACTTTGTTTTTCGTCTATTTTGCGAAAAAGATCCCTCTGAAACAAAGCTTGGATCGGAAGGACCTGCCATTGTAGAT AAATGGGTCGGCTTACAACTTGCTCCACTTGCAACCATAGGATTTCCAAAGTTTTTGAAACATTTTGAAGATCTTCTGATGCACACATTTCCAATACCAT TTTTCTTAGTAAAGTCTGATTATAAGAAGCTTTATGATGCATTTTATGCGTCTTCGAGTTCGGTTCTAGACAAAGCTGAGAGTTTTGGAATTGACAGAGA TGAAGCTTGCCATAACCTAGTGTTTGTTGCTGGAGAGAAGTTACACAGGCAACTTGCTAATGAAATCAGGACCGTTGTTAAAGAGGAAGGTGGGGTCACT TTCCAAGCCCTGGAAAAGATGACTTTGACCAAATCAGTAGTTTTTGAAGCCTTGAGGATTGAACCCGGGGTCCCATTCCAATACGGGAAGGCTAAGGAGG ATATTGTGATCAACAGTCATGATGCTGCTTATGAGATCAAGAAAGGTGAGATGATCTTTGGATACCAGCCGTTCGCTACAAAGGATCCTAAGATTTTTAT CATCCTGAGGAGAGAGAATCTATTGAAGTATGTTTATTGGTCAAACGGGCGGGAGACGGAGGATCCAACTGTGGGGAATAAGCAATGTCCTGGGAAAGAT CTAGTGGTGCTCTTGTCTAGGCTATTGGTGGTGGAGCTTTTCCTCCGATATGACACGTTTACTGTGGAGACGGCTGTGTTACCGTTTGGATCATCAGTGA CATTAACTTCATTGATCAAGGCCACAAGCACTTGA
AA sequence Show only first row Show all	>Potri.004G148600.2 pacid=42795216 polypeptide=Potri.004G148600.2.p locus=Potri.004G148600 ID=Potri.004G148600.2.v4.1 annot-version=v4.1 MFPPQSAVPLKPIPGSYGLPFFGAIKDRLDYFYNQGKDEFFSSRVEKYQSTVFKTNMPPGPFIAQNPKVIAVLDAISFPILFDTSKIEKFNVLDGTYLPS LSFTGGYRVCAYLDPSEPNHTSLKSFFMSVLASKHKDFVPLFRTCLSQMFIDIEDEMGSKRTANFNDSSDAMSFNFVFRLFCEKDPSETKLGSEGPAIVD KWVGLQLAPLATIGFPKFLKHFEDLLMHTFPIPFFLVKSDYKKLYDAFYASSSSVLDKAESFGIDRDEACHNLVFVAGEKLHRQLANEIRTVVKEEGGVT FQALEKMTLTKSVVFEALRIEPGVPFQYGKAKEDIVINSHDAAYEIKKGEMIFGYQPFATKDPKIFIILRRENLLKYVYWSNGRETEDPTVGNKQCPGKD LVVLLSRLLVVELFLRYDTFTVETAVLPFGSSVTLTSLIKATST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G42650		CYP74A, AOS, DD...	DELAYED DEHISCENCE 2, CYTOCHRO...		Potri.004G148600 [exp]	0	1
AT5G42650		CYP74A, AOS, DD...	DELAYED DEHISCENCE 2, CYTOCHRO...		Potri.004G148900 [exp]	1.00	1.0000
					Potri.006G260948 [exp]	5.65	0.9996
AT4G15550		IAGLU	indole-3-acetate beta-D-glucos...		Potri.006G055600 [exp]	7.48	0.9989	Pt-ZOG1.15
					Potri.003G010532 [exp]	7.54	0.9996
					Potri.003G010499 [exp]	9.38	0.9996
AT1G19250		FMO1	flavin-dependent monooxygenase...		Potri.001G335900 [exp]	10.24	0.9996
AT1G30890			Integral membrane HRF1 family ...		Potri.001G327700 [exp]	12.68	0.9995
					Potri.003G010598 [exp]	14.42	0.9971
					Potri.003G010565 [exp]	15.00	0.9977
AT2G15220			Plant basic secretory protein ...		Potri.009G094500 [exp]	19.18	0.9995

Compare expression of checked genes

Potri.004G148600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.