Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50830 250 / 4e-85 ATCOR413-PM2, COR413-PM2 cold-regulated 413-plasma membrane 2 (.1) AT4G37220 243 / 2e-82 Cold acclimation protein WCOR413 family (.1) AT2G15970 230 / 3e-77 ATCYP19, FL3-5A3, ATCOR413-PM1, WCOR413-LIKE, COR413-PM1 CYCLOPHILLIN 19, ARABIDOPSIS THALIANA COLD-REGULATED413 PLASMA MEMBRANE 1, cold regulated 413 plasma membrane 1 (.1.2) AT2G23680 144 / 2e-43 Cold acclimation protein WCOR413 family (.1.2) AT1G29390 67 / 6e-14 COR413IM2, COR314-TM2 COLD REGULATED 314 INNER MEMBRANE 2, cold regulated 314 thylakoid membrane 2 (.1.2) AT1G29395 65 / 7e-13 COR413IM1, COR413-TM1, COR414-TM1 cold regulated 414 thylakoid membrane 1, COLD REGULATED 314 THYLAKOID MEMBRANE 1, COLD REGULATED 314 INNER MEMBRANE 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G109800 [exp] 323 / 1e-113 AT3G50830 238 / 4e-80 cold-regulated 413-plasma membrane 2 (.1) Potri.007G033801 [exp] 273 / 2e-94 AT3G50830 282 / 1e-97 cold-regulated 413-plasma membrane 2 (.1) Potri.007G032000 [exp] 83 / 5e-20 AT4G37220 72 / 7e-16 Cold acclimation protein WCOR413 family (.1) Potri.001G353500 [exp] 46 / 5e-06 AT1G29395 185 / 1e-58 cold regulated 414 thylakoid membrane 1, COLD REGULATED 314 THYLAKOID MEMBRANE 1, COLD REGULATED 314 INNER MEMBRANE 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021020 [exp] 281 / 3e-97 AT4G37220 258 / 3e-88 Cold acclimation protein WCOR413 family (.1) Lus10012034 [exp] 251 / 1e-85 AT3G50830 250 / 4e-85 cold-regulated 413-plasma membrane 2 (.1) Lus10027946 [exp] 250 / 5e-85 AT3G50830 247 / 5e-84 cold-regulated 413-plasma membrane 2 (.1) Lus10027945 [exp] 248 / 4e-84 AT4G37220 245 / 4e-83 Cold acclimation protein WCOR413 family (.1) Lus10012035 [exp] 247 / 9e-84 AT4G37220 242 / 6e-82 Cold acclimation protein WCOR413 family (.1) Lus10016782 [exp] 241 / 1e-81 AT3G50830 277 / 9e-96 cold-regulated 413-plasma membrane 2 (.1) Lus10023833 [exp] 184 / 2e-59 AT3G50830 175 / 3e-56 cold-regulated 413-plasma membrane 2 (.1) Lus10004599 [exp] 61 / 6e-11 AT1G29395 201 / 9e-65 cold regulated 414 thylakoid membrane 1, COLD REGULATED 314 THYLAKOID MEMBRANE 1, COLD REGULATED 314 INNER MEMBRANE 1 (.1) Lus10025378 [exp] 58 / 4e-10 AT1G29390 225 / 2e-74 COLD REGULATED 314 INNER MEMBRANE 2, cold regulated 314 thylakoid membrane 2 (.1.2) Lus10015258 [exp] 57 / 7e-10 AT1G29390 223 / 1e-73 COLD REGULATED 314 INNER MEMBRANE 2, cold regulated 314 thylakoid membrane 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05562 [poplar] [flax] WCOR413 Cold acclimation protein WCOR413
Representative CDS sequence Show only first row Show all	>Potri.004G149100.4 pacid=42795242 polypeptide=Potri.004G149100.4.p locus=Potri.004G149100 ID=Potri.004G149100.4.v4.1 annot-version=v4.1 ATGGAAAAGAAGAAAGGTTACTTGGCGATGAGGACGGATCAAGAAATGGCAAGTGGATTGATTACTTCTGATTTTCAAGACTTTGCTAATGCTGCTAAGA AGCTAGCTAATCATGCTATCAAGCTTGGCGGATTAGGATTTGGTACCACTTTTCTTCAATGGATCGCTTCTTTTGCTGCAATTTATCTATTGATCTTGGA TCGAACGAACTGGAAAACGAACATTCTTACTGGACTATTAATCCCCTACATTTTCTTTACTCTTCCTTCAATATTGTTCAACGTGTTCAGGGGACAGATT GGAAGATGGATCGCTTTCGTTGCTCTTATATTGCGTCTTTTCTTCCCAAAACATTTCCCAGATTGGCTTGAATTGCCTAGTGCTTTGATTCTTCTAATAG TGGTGGCTCCCAGTTTGTTTGCGAGCACGATAAGGAATGATTGGATTGGTGTGGTCATATGTTTAGTCATTGCATGTTATTTGCTCCAAGAACACATCCG GGCATGTGGCGGGTTTAGAAACTCCTTCACAAAAGCTAATGGCATATCCAACATTGTTGGCATAATACTTCTGTTTGTTTATCCTGCCTGGGCAATTGTG CTTTATATCCTTTAA
AA sequence Show only first row Show all	>Potri.004G149100.4 pacid=42795242 polypeptide=Potri.004G149100.4.p locus=Potri.004G149100 ID=Potri.004G149100.4.v4.1 annot-version=v4.1 MEKKKGYLAMRTDQEMASGLITSDFQDFANAAKKLANHAIKLGGLGFGTTFLQWIASFAAIYLLILDRTNWKTNILTGLLIPYIFFTLPSILFNVFRGQI GRWIAFVALILRLFFPKHFPDWLELPSALILLIVVAPSLFASTIRNDWIGVVICLVIACYLLQEHIRACGGFRNSFTKANGISNIVGIILLFVYPAWAIV LYIL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G50830		ATCOR413-PM2, C...	cold-regulated 413-plasma memb...		Potri.004G149100 [exp]	0	1
AT3G51030		ATTRX1, ATTRXH1	ARABIDOPSIS THALIANA THIOREDOX...		Potri.005G232700 [exp]	9.27	0.7824
AT2G06520		PSBX	photosystem II subunit X (.1)		Potri.018G065200 [exp]	12.08	0.6792
AT4G03415			Protein phosphatase 2C family ...		Potri.013G144100 [exp]	12.96	0.6753
AT4G19840		AtPP2A-1, ATPP2...	phloem protein 2-A1 (.1)		Potri.012G120400 [exp]	14.38	0.7768
AT5G22090			Protein of unknown function (D...		Potri.009G016600 [exp]	14.83	0.7835
AT1G51340			MATE efflux family protein (.1...		Potri.009G053700 [exp]	19.13	0.7484
AT4G18210		ATPUP10	purine permease 10 (.1)		Potri.001G352100 [exp]	21.72	0.7525
AT4G35290		ATGLUR2, ATGLR3...	GLUTAMATE RECEPTOR 3.2, glutam...		Potri.009G168300 [exp]	31.78	0.7400	Pt-GLUR2.1
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Potri.006G174600 [exp]	35.42	0.7519
AT4G22200		AKT3, AKT2/3	potassium transport 2/3 (.1)		Potri.003G018800 [exp]	37.49	0.6790	Pt-AKT2.1

Compare expression of checked genes

Potri.004G149100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.