Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15980 477 / 4e-165 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G26680 192 / 9e-55 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G05670 175 / 3e-47 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT5G39710 173 / 2e-46 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G11690 168 / 2e-45 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT2G02150 163 / 6e-43 EMB2794 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62930 162 / 7e-43 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62910 161 / 1e-42 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63130 159 / 4e-42 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G17140 158 / 5e-41 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G110400 [exp] 325 / 9e-110 AT2G15980 195 / 3e-60 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G166001 [exp] 196 / 3e-56 AT4G26680 697 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.009G105600 [exp] 191 / 1e-52 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G050240 [exp] 162 / 5e-43 AT1G12700 465 / 1e-155 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.010G035700 [exp] 162 / 1e-42 AT1G05670 922 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Potri.005G050300 [exp] 160 / 2e-42 AT1G12700 466 / 5e-156 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G038400 [exp] 159 / 3e-42 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G257300 [exp] 159 / 3e-42 AT1G62930 481 / 3e-163 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G050180 [exp] 159 / 3e-42 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020712 [exp] 504 / 3e-175 AT2G15980 408 / 4e-138 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027916 [exp] 187 / 2e-51 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009548 [exp] 183 / 2e-51 AT4G26680 561 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10027914 [exp] 178 / 4e-48 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 177 / 2e-47 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004615 [exp] 157 / 1e-41 AT2G06000 531 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2) Lus10004533 [exp] 155 / 5e-41 AT2G06000 517 / 4e-180 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2) Lus10037968 [exp] 157 / 9e-41 AT5G55840 1131 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039056 [exp] 156 / 1e-40 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013283 [exp] 153 / 9e-40 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.004G149400.1 pacid=42793860 polypeptide=Potri.004G149400.1.p locus=Potri.004G149400 ID=Potri.004G149400.1.v4.1 annot-version=v4.1 ATGCCACCACTCCTCAAACGCTTCCTCCACCATCCACCTCTACCACCACCACCACCAACCTACTCTCTCCCCTTCTCCACCACCACGTCTCCACCACCCA ACCATCACTCCCCTCTAACCACTGCTATCATTTCCCTCCTCACTCACCACCGTTCCAAATCCCGCTGGTCCCACCTCCGCTCTCTCCTTACTACCACCAC CAGCACCCCCCTCGCCCCTGGTCATTTTTCCCTAATCACCCTCAAATTAAAATCAAATCCCCATCTTGCCCTCAGCTTCTTTCACTTCACCCTCCACAAC TCCTCTCTTTGCTCTCACAATCTCCGCTCCTATGCCACCATCATTCATATCCTCTCCCGGGCCCGCCTGAAGGCCCATGCCCAGGAAATTATTCGGGCCG GACTCCGGTCGCAGATTTTGTTTAATAATGATGAGGATGCCTTTGCTGAGCAGACAGGACTGAGCAGGGTGGAACAGGATTGTGAAGGACACAGGGGCCC CAGGTACCACCTGCTAAAAGAAGTGAGATTTTTTGAAGTTTTAGTGAAAAGTTATAGAGAGTGTGATTCAGCTCCATTTGTGTTTGATTTGTTGATAAAA TCTTGTTTAGAATTGAAAAAGATAGATGGGTCTATTGAGATTGTGAAGATGTTAAGGTCTAAAGGGATTAGTCCATCAATTAGTACTTGTAATGCTTTGA TTAGTGAGGTTTCAAGGTGTAAAGGGTCGTTTGTTGGTTATGGGGTTTTTAAGGAGGTTTTTGGATTGGAAAGTTGTGAACTTGGGGAGAAAATGAGAAG GGGTTTTAGAGTTAGGCCTAATGTGCATAGTTTTAATGAATTAATGGTGGGGTTTTATAGAAATGGTGAAGTGGAGATGGTTGAGGAGATTTGGAGTGAA ATGGAGAGATTTGGCTGCGTTGCAAATGGGTTTAGCTATGGTGTTTTAATGGCTGTTTTTTGTGAGGGAGGGAGGTTAAGTGAAGCAGAGAGGTTATGGG ACGAAATGAGAGTGAAAGGAATAATGCCTGATGTTGTTGCTTATAATACTATCATTGGTGGGTTTTGTAAGGCTGGAGAGGTTGAGAAAGCTGAGGGTCT TTTTAGGGAAATGGGATTGAGTGGAATCGAGAGTAGTTGTGTTACTTTTGAGCATCTTATTGAGGGGTATTGTAGAATTGGGGATGTTAATTCGGCTATT CTTGTGTATAAGGATATGCGTAGGAGAGACTTTAGGCTTGAAGCTTTGACAATGGAGGTGTTGATTGGAGGGCTTTGTGAGCAGAAAAGAGTTTTTGAAG CTTTGAAGATTATGAGGAGTGCAATGAGAGATGTTAGTTTTCATCCGAATGGGAAGAGTTATGAATTATTGATTAACGGATTGTGTGAGGATGGGAAAAT GGAAGAAGCATTGAAGCTTCAATCAGAGATGGTGGGGAAAGGGTTTGACCCAAATTCAGCAATTTATGGTGCTTTTATTGAAGGGTATGTGAAATTGGGA AATGAGGAAATGGCAGCTATGTTGAGGAAGGAAATGTCTGTAGCTCAAAAGCAGCAGCAAGAGGATAATGTTACCGATTGA
AA sequence Show only first row Show all	>Potri.004G149400.1 pacid=42793860 polypeptide=Potri.004G149400.1.p locus=Potri.004G149400 ID=Potri.004G149400.1.v4.1 annot-version=v4.1 MPPLLKRFLHHPPLPPPPPTYSLPFSTTTSPPPNHHSPLTTAIISLLTHHRSKSRWSHLRSLLTTTTSTPLAPGHFSLITLKLKSNPHLALSFFHFTLHN SSLCSHNLRSYATIIHILSRARLKAHAQEIIRAGLRSQILFNNDEDAFAEQTGLSRVEQDCEGHRGPRYHLLKEVRFFEVLVKSYRECDSAPFVFDLLIK SCLELKKIDGSIEIVKMLRSKGISPSISTCNALISEVSRCKGSFVGYGVFKEVFGLESCELGEKMRRGFRVRPNVHSFNELMVGFYRNGEVEMVEEIWSE MERFGCVANGFSYGVLMAVFCEGGRLSEAERLWDEMRVKGIMPDVVAYNTIIGGFCKAGEVEKAEGLFREMGLSGIESSCVTFEHLIEGYCRIGDVNSAI LVYKDMRRRDFRLEALTMEVLIGGLCEQKRVFEALKIMRSAMRDVSFHPNGKSYELLINGLCEDGKMEEALKLQSEMVGKGFDPNSAIYGAFIEGYVKLG NEEMAAMLRKEMSVAQKQQQEDNVTD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G15980			Tetratricopeptide repeat (TPR)...		Potri.004G149400 [exp]	0	1
AT3G16620		ATTOC120	ARABIDOPSIS THALIANA TRANSLOCO...		Potri.004G171600 [exp]	2.82	0.8279
AT3G04340		EMB2458	embryo defective 2458, FtsH ex...		Potri.013G048700 [exp]	2.82	0.8215
AT3G04130			Tetratricopeptide repeat (TPR)...		Potri.010G055500 [exp]	6.24	0.8175
AT5G65180			ENTH/VHS family protein (.1.2)		Potri.005G080600 [exp]	9.48	0.7848
AT1G28060			Pre-mRNA-splicing factor 3 (.1...		Potri.010G213300 [exp]	12.96	0.7923
AT5G04810			pentatricopeptide (PPR) repeat...		Potri.010G241300 [exp]	16.12	0.7819
AT4G33495		RPD1	ROOT PRIMORDIUM DEFECTIVE 1, U...		Potri.015G141700 [exp]	16.37	0.8126
AT5G41770			crooked neck protein, putative...		Potri.001G094400 [exp]	20.39	0.7747
AT3G54350	FHA	EMB1967	embryo defective 1967, Forkhea...		Potri.005G117900 [exp]	26.68	0.7877
AT3G19840		ATPRP40C	pre-mRNA-processing protein 40...		Potri.010G170400 [exp]	27.82	0.7946

Compare expression of checked genes

Potri.004G149400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.