Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37240 126 / 4e-37 unknown protein AT2G23690 123 / 5e-36 unknown protein AT3G50800 117 / 7e-34 unknown protein AT5G66580 117 / 1e-33 unknown protein AT1G21010 64 / 6e-13 unknown protein AT1G76600 64 / 6e-13 unknown protein AT1G28190 57 / 3e-10 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G110600 [exp] 253 / 3e-87 AT2G23690 112 / 1e-31 unknown protein Potri.005G130200 [exp] 141 / 2e-43 AT2G23690 174 / 2e-56 unknown protein Potri.007G033400 [exp] 137 / 2e-41 AT2G23690 165 / 7e-53 unknown protein Potri.009G110700 [exp] 92 / 1e-23 AT5G66580 77 / 2e-18 unknown protein Potri.004G149800 [exp] 82 / 4e-20 AT5G66580 91 / 7e-24 unknown protein Potri.002G002100 [exp] 67 / 7e-14 AT1G21010 163 / 1e-50 unknown protein Potri.005G259100 [exp] 64 / 1e-12 AT1G21010 186 / 9e-60 unknown protein Potri.001G070700 [exp] 60 / 6e-11 AT1G28190 150 / 2e-44 unknown protein Potri.003G160000 [exp] 59 / 2e-10 AT1G28190 168 / 4e-51 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019659 [exp] 131 / 2e-39 AT5G66580 141 / 4e-44 unknown protein Lus10016785 [exp] 119 / 2e-34 AT2G23690 138 / 4e-42 unknown protein Lus10000739 [exp] 100 / 2e-27 AT5G66580 105 / 6e-30 unknown protein Lus10037249 [exp] 73 / 4e-16 AT1G76600 130 / 4e-38 unknown protein Lus10012442 [exp] 71 / 2e-15 AT1G76600 152 / 2e-46 unknown protein Lus10033761 [exp] 69 / 9e-15 AT1G76600 150 / 1e-45 unknown protein Lus10035664 [exp] 66 / 1e-13 AT1G21010 125 / 4e-36 unknown protein Lus10036322 [exp] 0 / 1 AT1G76600 62 / 9e-16 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF14009 [poplar] [flax] DUF4228 Domain of unknown function (DUF4228)
Representative CDS sequence Show only first row Show all	>Potri.004G149600.1 pacid=42793901 polypeptide=Potri.004G149600.1.p locus=Potri.004G149600 ID=Potri.004G149600.1.v4.1 annot-version=v4.1 ATGGGAAATACTTGTAATTCATGTGAATCCACCTCAGTGGTCACAGCAAAGCTGATCTTTGAAGATGGCAAACTCGAAGAATTTTCATACTCAATCAGGG TTTCGCAGATAGTACGAAGAAACCCTAAGTGTTTTGTATGCAAAGCAGACGACATGGAATTTGATGAATATGTTCCAGCGATCAATGAAAACGAACATCT TCAGTTAGGCCGTCTTTACTTCGCGTTGCCATCAAGTTGGTTAAACAATCCTCTTAGCACTGAACAGATGGCTGCCTTGGCAGTGAAGGCAAATTCAGCC CTGAAGATGAGTACCAGGGGCGGATTTTGTTGGTGTTGGATAAAGAAAGTGGATCCCGCGATTGAGTGGAGTAGCAAGAGCCCTAGTGATGAGACTAGTC CGATGGTGGCGGCAGGCACCCACAGTGATGGCGGAGGATTTGTTGCGGAGAGAAGAGGGAAGAGTGGTGGCAGAGAAAGGAAATCAACGACTAGATTGAC TCCAAGATTGAGTGCTATCTTGGAGGAGTAA
AA sequence Show only first row Show all	>Potri.004G149600.1 pacid=42793901 polypeptide=Potri.004G149600.1.p locus=Potri.004G149600 ID=Potri.004G149600.1.v4.1 annot-version=v4.1 MGNTCNSCESTSVVTAKLIFEDGKLEEFSYSIRVSQIVRRNPKCFVCKADDMEFDEYVPAINENEHLQLGRLYFALPSSWLNNPLSTEQMAALAVKANSA LKMSTRGGFCWCWIKKVDPAIEWSSKSPSDETSPMVAAGTHSDGGGFVAERRGKSGGRERKSTTRLTPRLSAILEE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G37240			unknown protein		Potri.004G149600 [exp]	0	1
					Potri.014G013800 [exp]	1.41	0.8692
AT1G76410		ATL8	RING/U-box superfamily protein...		Potri.002G006400 [exp]	2.23	0.8267
AT2G39890		ATPROT1, ProT1	proline transporter 1 (.1.2)		Potri.008G062900 [exp]	4.24	0.7946	PtrProT1
AT1G10690			unknown protein		Potri.010G045200 [exp]	16.00	0.8316
AT4G13630			Protein of unknown function, D...		Potri.017G055100 [exp]	16.73	0.8473
AT5G28490		OBO2, LSH1	ORGAN BOUNDARY 2, LIGHT-DEPEND...		Potri.009G157600 [exp]	17.54	0.7984
AT4G39330		AtCAD1, ATCAD9	cinnamyl alcohol dehydrogenase...		Potri.001G372400 [exp]	19.62	0.7664
AT3G14470			NB-ARC domain-containing disea...		Potri.018G017900 [exp]	20.56	0.8367	Pt-RGA.54
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.017G007600 [exp]	21.44	0.7873
AT3G06390			Uncharacterised protein family...		Potri.008G205000 [exp]	21.90	0.7912

Compare expression of checked genes

Potri.004G149600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.