Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66580 90 / 2e-23 unknown protein AT3G50800 89 / 3e-23 unknown protein AT2G23690 82 / 2e-20 unknown protein AT4G37240 81 / 4e-20 unknown protein AT1G76600 76 / 1e-17 unknown protein AT1G21010 68 / 1e-14 unknown protein AT1G28190 50 / 7e-08 unknown protein AT2G30230 46 / 9e-07 unknown protein AT1G29195 45 / 2e-06 unknown protein AT1G06980 45 / 2e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G110700 [exp] 185 / 6e-61 AT5G66580 77 / 2e-18 unknown protein Potri.005G130200 [exp] 87 / 2e-22 AT2G23690 174 / 2e-56 unknown protein Potri.007G033400 [exp] 87 / 2e-22 AT2G23690 165 / 7e-53 unknown protein Potri.004G149600 [exp] 82 / 3e-20 AT4G37240 125 / 5e-37 unknown protein Potri.009G110600 [exp] 73 / 1e-16 AT2G23690 112 / 1e-31 unknown protein Potri.008G127200 [exp] 64 / 2e-13 AT3G03280 127 / 2e-37 unknown protein Potri.010G116000 [exp] 64 / 4e-13 AT3G03280 131 / 4e-39 unknown protein Potri.012G045600 [exp] 59 / 1e-11 AT1G18290 129 / 1e-38 unknown protein Potri.015G036800 [exp] 59 / 2e-11 AT1G18290 122 / 1e-35 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019659 [exp] 82 / 1e-20 AT5G66580 141 / 4e-44 unknown protein Lus10016785 [exp] 79 / 3e-19 AT2G23690 138 / 4e-42 unknown protein Lus10000739 [exp] 71 / 1e-16 AT5G66580 105 / 6e-30 unknown protein Lus10035268 [exp] 69 / 4e-15 AT5G17350 116 / 4e-33 unknown protein Lus10012442 [exp] 62 / 3e-12 AT1G76600 152 / 2e-46 unknown protein Lus10033761 [exp] 62 / 3e-12 AT1G76600 150 / 1e-45 unknown protein Lus10013490 [exp] 61 / 3e-12 AT3G03280 110 / 6e-31 unknown protein Lus10007960 [exp] 61 / 4e-12 AT3G03280 109 / 3e-30 unknown protein Lus10042244 [exp] 48 / 3e-07 AT1G06980 173 / 1e-55 unknown protein Lus10037249 [exp] 48 / 4e-07 AT1G76600 130 / 4e-38 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF14009 [poplar] [flax] DUF4228 Domain of unknown function (DUF4228)
Representative CDS sequence Show only first row Show all	>Potri.004G149800.1 pacid=42794885 polypeptide=Potri.004G149800.1.p locus=Potri.004G149800 ID=Potri.004G149800.1.v4.1 annot-version=v4.1 ATGGGCAATTGTGCATCGCCTCAGTACAAGGAAAAGGTTGCCGGTGGTGGTCTAAACCGGACATCTCCGGCCAAAATAGTTCACATAGATGGAAGGCTAC AGGAATTCAGAGAGCCAATCAAAGCCAGCAACGTACTCTCCCTGAACCCCAACAGCTTCCTCTGCAGTTCAGAATCCATGTACATTGATCGTCGGCTGCC CCAAGTGCCAGATGATGAGGAGCTTCAAGTGGGTCAGCTTTATTTCCTCATGCCACTATCCAAGTCAAAAACCCCGTTATCCCTGCAAGAATTATGCGCC CTTGCTAGTAAAGCTAACGCATCTCTTGCTCAATCGGACATGGGGCTTACGCAGAAAAAACATTACCGTATTTGGATAGATGTGGCACTAAAATTCTGGC CAGTGATCAACGGTGCTGTAAGATTCCGATTCGCATCGACATAA
AA sequence Show only first row Show all	>Potri.004G149800.1 pacid=42794885 polypeptide=Potri.004G149800.1.p locus=Potri.004G149800 ID=Potri.004G149800.1.v4.1 annot-version=v4.1 MGNCASPQYKEKVAGGGLNRTSPAKIVHIDGRLQEFREPIKASNVLSLNPNSFLCSSESMYIDRRLPQVPDDEELQVGQLYFLMPLSKSKTPLSLQELCA LASKANASLAQSDMGLTQKKHYRIWIDVALKFWPVINGAVRFRFAST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G66580			unknown protein		Potri.004G149800 [exp]	0	1
AT3G45640		ATMAPK3, ATMPK3	mitogen-activated protein kina...		Potri.009G066100 [exp]	10.29	0.8279	Pt-MPK3.2
AT4G23030			MATE efflux family protein (.1...		Potri.003G121400 [exp]	15.87	0.8132
AT1G20100			unknown protein		Potri.005G242400 [exp]	18.43	0.7490
AT2G33060		AtRLP27	receptor like protein 27 (.1)		Potri.012G025300 [exp]	18.73	0.8172
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.018G134700 [exp]	19.59	0.6664
AT4G23810	WRKY	ATWRKY53, WRKY5...	WRKY family transcription fact...		Potri.014G096200 [exp]	19.69	0.8159
AT4G39830			Cupredoxin superfamily protein...		Potri.007G088358 [exp]	21.02	0.8256
AT3G05880		RCI2A	RARE-COLD-INDUCIBLE 2A, Low te...		Potri.005G002100 [exp]	23.55	0.6692
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014334 [exp]	23.91	0.8049
					Potri.010G078950 [exp]	25.19	0.8143

Compare expression of checked genes

Potri.004G149800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.