Plant FIBer expression Database

Potri.004G149900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G16070 220 / 4e-70 PDV2 plastid division2 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G111000
[exp]
427 / 3e-151 AT2G16070 229 / 8e-74 plastid division2 (.1.2)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.004G149900.1 pacid=42795851 polypeptide=Potri.004G149900.1.p locus=Potri.004G149900 ID=Potri.004G149900.1.v4.1 annot-version=v4.1
ATGGAAGATGAGGGAATTGAAGCTGTGTTGGCCAAAGCCATAGACTTGAGATTAAAGATCAGTAATTGCATCCATAGAGCAACCACCACCAGCATTACCA
GCAACAAAAAGACTCCATCTTTCGAGGAAGAGGAGCAAGAAAGTGAGGGTCTTGGAGAGAAAGGATGGAAGAAAAAGAGTCCTGAGAATTCAGAATTTCT
TGATGGGGTTTCATTGAGTGAAGCAGAGGAAGGAGAGGATGACGAGACCGAGAGGCTTTTGCTCATCCGTGATGCTTTTGAGTCCCTTGAGAGCCAGCTC
TCTAACTTGCAGGCTCTGCAGCAGCAGCAACATTATGAAAAGGAAGTTGCCCTTAGTGAGATTGAACATAGCCGCAAGATATTATTGGATAAGCTTAAGG
AGTACAGAGGGGAAGACTTGGAAGTAATAAAGGAAGCCTCTGCATTTGCTGGGGAAACAGTGGAGCACAACAATGACCTCTTGCTTCCTCCTTATCCCAG
CCGCCATCCACAGTCCCTGGTTTTAAACAGTCGATATCTGTATCACTTTCCTTCCACACGCAATTCCAATGGAATAATCGCTGGTGAAGCGAAGAGGCAT
CTGGATGAGCCAGAAGGCAATCAAGCACAAACTGCATCCAAAAACTCAAGAAAAGGATTGGGACATTTCATAAGTGCAGCAGCCAAGACCGTGATTACCC
TTGTTGGAGTAATTTCAGTGTTAAGCTTGGCAGGTTTTGGACCAAGCATTGGGAAAAAAGGTGCTCCTCTTAAGGTTTTGGGCTTGTTTCAGCAACCAGC
ACTTGAAGAGAGGAAAGAAGCCGTTCAATGCCCACCTGGGAGAATTCTTGTGCTGGAAGATGGTGAAGCCCGGTGTGTTGTGAAAGGAAGGGTGGCAGTT
CCTTTTAATTCATTGGTAGGAAAGCCTGATGTAAACTATGGGAGTGGTTAG
AA sequence
>Potri.004G149900.1 pacid=42795851 polypeptide=Potri.004G149900.1.p locus=Potri.004G149900 ID=Potri.004G149900.1.v4.1 annot-version=v4.1
MEDEGIEAVLAKAIDLRLKISNCIHRATTTSITSNKKTPSFEEEEQESEGLGEKGWKKKSPENSEFLDGVSLSEAEEGEDDETERLLLIRDAFESLESQL
SNLQALQQQQHYEKEVALSEIEHSRKILLDKLKEYRGEDLEVIKEASAFAGETVEHNNDLLLPPYPSRHPQSLVLNSRYLYHFPSTRNSNGIIAGEAKRH
LDEPEGNQAQTASKNSRKGLGHFISAAAKTVITLVGVISVLSLAGFGPSIGKKGAPLKVLGLFQQPALEERKEAVQCPPGRILVLEDGEARCVVKGRVAV
PFNSLVGKPDVNYGSG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G16070 PDV2 plastid division2 (.1.2) Potri.004G149900
[exp]
0 1
AT3G06790 plastid developmental protein ... Potri.010G007200
[exp]
6.48 0.8320
AT2G19520 ATMSI4, ACG1, N... MULTICOPY SUPPRESSOR OF IRA1 4... Potri.006G151800
[exp]
7.74 0.7929 NFC905,ATMSI4.4
AT3G25890 AP2_ERF CRF11 cytokinin response factor 11, ... Potri.010G125600
[exp]
8.30 0.8003
AT4G16835 Tetratricopeptide repeat (TPR)... Potri.003G081700
[exp]
11.35 0.8417
AT3G62470 Pentatricopeptide repeat (PPR)... Potri.014G121400
[exp]
13.11 0.8413
AT4G38170 FRS9 FAR1-related sequence 9 (.1) Potri.004G209100
[exp]
13.85 0.8249
AT5G07900 Mitochondrial transcription te... Potri.001G029400
[exp]
17.60 0.8244
AT5G37530 NAD(P)-binding Rossmann-fold s... Potri.004G083200
[exp]
28.58 0.7879
AT5G66520 Tetratricopeptide repeat (TPR)... Potri.003G155600
[exp]
31.74 0.8125
AT2G17525 Pentatricopeptide repeat (PPR)... Potri.005G102400
[exp]
33.15 0.8168

Potri.004G149900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.