Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34360 385 / 7e-137 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G60910 116 / 3e-31 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G17365 110 / 6e-29 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT2G31740 73 / 2e-14 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G66680 55 / 2e-08 AR401 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G055600 [exp] 123 / 1e-33 AT3G60910 378 / 1e-133 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G261000 [exp] 121 / 3e-33 AT3G60910 387 / 2e-137 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.010G153200 [exp] 100 / 3e-25 AT3G17365 313 / 1e-108 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.001G317700 [exp] 81 / 3e-17 AT2G31740 886 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019750 [exp] 115 / 9e-31 AT3G60910 394 / 3e-140 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10016376 [exp] 100 / 9e-25 AT3G60910 327 / 2e-113 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10016375 [exp] 73 / 3e-16 AT3G60910 164 / 7e-52 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10016656 [exp] 78 / 6e-16 AT2G31740 895 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10017619 [exp] 49 / 1e-06 AT1G66680 471 / 1e-167 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10033577 [exp] 49 / 1e-06 AT1G66680 385 / 3e-132 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10037890 [exp] 42 / 0.0002 AT5G54400 449 / 2e-160 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10038599 [exp] 42 / 0.0003 AT5G54400 455 / 8e-163 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF13847 [poplar] [flax] Methyltransf_31 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Potri.004G150200.2 pacid=42794527 polypeptide=Potri.004G150200.2.p locus=Potri.004G150200 ID=Potri.004G150200.2.v4.1 annot-version=v4.1 ATGCAAGAAGAAAGCGAGCCTAAGCTGAGAAACCCTGAAATGGAAGGGTCCCGAAAGCCGACCACCGAGCCTCCCTCTACTGCTCTGGCTTACCAGGATC CTCACTACTGGAACGAGAGATTCTCTAAGGAGGAACATTACGAATGGTTCAAAGACTACTCTCATTTTCGCCATCTTATTCAAGCCCACATCCCTCCAAC CTCCTCTGTGTTGGAGCTTGGTTGTGGGAATTCACAGTTGTGTGAAGAAATGTACAGAGATGGAATTACTGAGGTTACTTGCATTGATTTGTCCGCTGTT GCGGTCGAGAAGATGCAGAAACGGTTGGAAGCTAAGGGGTATAAAGAAATAAAAGTGCTGGAAGCTGACATGCTAGACCTGCCCTTTAATGATGAATGTT TTGATGTGGTTATTGAGAAAGGAACCATGGATGTATTATTCGTCAACAGTGGTGACCCATGGAATCCAAGGCCTGAAACAGTAGCCCAAGTGAAGGCAAT GCTTGAAGGAGTTCACAGGGTTCTGAAACCAGATGGCATTTTTATCTCGATCTCTTTTGGCCAGCCACATTTTAGGCGTCCTTTATTTGATGCTCCGGAC TTCACTTGGTCTGTAGAGTGGAGCACTTTTGGTGATGGATTTCACTACTTTTTCAATGTCTTGAGGAAGGGGAAGAGATCATCAAGTGACGAAGGGTCTA GTGGAAAGAATGAAATACCATCCATTTGTCTATTTCAAGAAGAATTAGAGGGAGAAGATTTTATTTTTCGAACCAACATAGATGAAAATTCTTAG
AA sequence Show only first row Show all	>Potri.004G150200.2 pacid=42794527 polypeptide=Potri.004G150200.2.p locus=Potri.004G150200 ID=Potri.004G150200.2.v4.1 annot-version=v4.1 MQEESEPKLRNPEMEGSRKPTTEPPSTALAYQDPHYWNERFSKEEHYEWFKDYSHFRHLIQAHIPPTSSVLELGCGNSQLCEEMYRDGITEVTCIDLSAV AVEKMQKRLEAKGYKEIKVLEADMLDLPFNDECFDVVIEKGTMDVLFVNSGDPWNPRPETVAQVKAMLEGVHRVLKPDGIFISISFGQPHFRRPLFDAPD FTWSVEWSTFGDGFHYFFNVLRKGKRSSSDEGSSGKNEIPSICLFQEELEGEDFIFRTNIDENS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G34360			S-adenosyl-L-methionine-depend...		Potri.004G150200 [exp]	0	1
AT4G14000			Putative methyltransferase fam...		Potri.001G321100 [exp]	2.64	0.9079
AT3G25970			Pentatricopeptide repeat (PPR)...		Potri.007G146800 [exp]	4.24	0.9053
AT3G25440		LOH1	LAG One Homologue 1, RNA-bindi...		Potri.014G176900 [exp]	5.74	0.8800
AT2G29950		ELF4-L1	ELF4-like 1 (.1)		Potri.001G251600 [exp]	6.32	0.8868
AT4G26780		MGE2, AR192	mitochondrial GrpE 2, Co-chape...		Potri.015G065800 [exp]	8.06	0.8784
AT5G40410			Tetratricopeptide repeat (TPR)...		Potri.002G014800 [exp]	9.94	0.9013
AT5G08310			Tetratricopeptide repeat (TPR)...		Potri.005G090600 [exp]	10.00	0.8977
AT1G50910			unknown protein		Potri.011G136400 [exp]	10.58	0.8777
AT3G22450			Ribosomal L18p/L5e family prot...		Potri.008G153100 [exp]	11.22	0.8947
AT1G26660			Prefoldin chaperone subunit fa...		Potri.008G091400 [exp]	12.24	0.8655

Compare expression of checked genes

Potri.004G150200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.