Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-CLB6.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34350 683 / 0 HDR, CLB6, ISPH CHLOROPLAST BIOGENESIS 6, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T124604 [exp] 794 / 0 AT4G34350 736 / 0.0 CHLOROPLAST BIOGENESIS 6, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (.1) Potri.009G111569 [exp] 794 / 0 AT4G34350 736 / 0.0 CHLOROPLAST BIOGENESIS 6, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026322 [exp] 723 / 0 AT4G34350 760 / 0.0 CHLOROPLAST BIOGENESIS 6, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (.1) Lus10040509 [exp] 719 / 0 AT4G34350 750 / 0.0 CHLOROPLAST BIOGENESIS 6, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (.1) Lus10011310 [exp] 712 / 0 AT4G34350 743 / 0.0 CHLOROPLAST BIOGENESIS 6, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (.1) Lus10042345 [exp] 680 / 0 AT4G34350 713 / 0.0 CHLOROPLAST BIOGENESIS 6, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (.1) Lus10009762 [exp] 117 / 6e-31 AT4G34350 124 / 6e-34 CHLOROPLAST BIOGENESIS 6, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02401 [poplar] [flax] LYTB LytB protein
Representative CDS sequence Show only first row Show all	>Potri.004G150400.1 pacid=42796760 polypeptide=Potri.004G150400.1.p locus=Potri.004G150400 ID=Potri.004G150400.1.v4.1 annot-version=v4.1 ATGGCTATGTCACTCCAACTCTGCCGCGTACCTCTCCGCTCCTACCTTTCCTCCGACAATCGCATACCTCCCCGCCGCCGTATAACCACCGTGTTCTTCC GCTGCGCCGGCGGTGATGGCTCTACTTCTTCAGACTCTTCGGAGTCTGGATTTGACGCCAAAGTGTTCAGACATAATCTGACAAGAGGCAAGAATTATAA TCGCAGAGGCTTTGGTCACAAAGAAGAGACTCTTGAACTCATGAATCGCGAGTACACCAGTGATATAATAGAGATGTTGAAGGAGAATGGAAATCAGTAT ACATGGGGAAATGTTACAGTCAAATTAGCAGAAGCTTATGGATTTTGCTGGGGAGTAGAGCGAGCTGTTCAGATTGCTTACGAAGCCAGAAAACAATTTC GAGATGAGAAGATTTGGATTACTAATGAGATTATTCACAATCCGACAGTTAATAAGCGGTTAGAGGAGATGGAAGTTGAAAACCTTCCTGTTGAGGAAGG GAAGAAACGGTTTGAAGTTGTAAATGGTGGTGATGTCGTGATTTTGCCTGCTTTTGGAGCGGCGGTGGATGAGATGTTTACTTTGAGCAACAAAAATATA CAAATTGTTGATACAACTTGCCCTTGGGTGTCTAAGGTTTGGAATGCTGTTGAGAAGCAGAAGAAGGGAGATTATACCTCAATTATTCATGGGAAATATG CTCATGAGGAAACTGTAGCAACTGCTTCTTTTGCAGGAAAGTACATTGTTGTGAAGAATATGAAAGAGGCAATGTATGTGTGTGATTACGTTCTTGGGGG TGGACTTAATGGATCTAGCTCAACCAGAGAGGAATTTCTGGAGAAATTTAAGAAAGCAGTTTCCAAGGGGTTTGATCCTGACAGTTACCTGGTTAAAGTT GGCATTGCAAATCAAACTACAATGCTCAAGGGAGAAACAGAAGAGATTGGGAAATTGGTCGAGAGGACCATGATGCGCAAGTATGGAGTGGAAAATATAA ATGATCACTTCATAAGCTTCAACACCATTTGTGATGCTACTCAGGTGCGACAGGATGCAATGTATAATCTGGTGGAGGAAAAGTTGGACCTTATGTTGGT CGTTGGTGGGTGGAACTCAAGTAACACCTCCCACCTTCAAGAAATTGCTGAGCTCCGTGGAATTCCTTCATACTGGATTGACAGTGAACAGAGGATAGGC CCAGGAAACAGAATAGCTTATAAGTTGAATCATGGGGAGTTGGCTGAGAAAGAGAACTGGCTTCCAGAAGGTCCCATTACAATTGGTGTGACATCAGGTG CCTCTACACCAGACAAGGTTGTTGGAGAAGCCCTTGTCAAGGTGCTCGGCATCAGCGGCGAGGAAGGCTTGCAACTAGCATGA
AA sequence Show only first row Show all	>Potri.004G150400.1 pacid=42796760 polypeptide=Potri.004G150400.1.p locus=Potri.004G150400 ID=Potri.004G150400.1.v4.1 annot-version=v4.1 MAMSLQLCRVPLRSYLSSDNRIPPRRRITTVFFRCAGGDGSTSSDSSESGFDAKVFRHNLTRGKNYNRRGFGHKEETLELMNREYTSDIIEMLKENGNQY TWGNVTVKLAEAYGFCWGVERAVQIAYEARKQFRDEKIWITNEIIHNPTVNKRLEEMEVENLPVEEGKKRFEVVNGGDVVILPAFGAAVDEMFTLSNKNI QIVDTTCPWVSKVWNAVEKQKKGDYTSIIHGKYAHEETVATASFAGKYIVVKNMKEAMYVCDYVLGGGLNGSSSTREEFLEKFKKAVSKGFDPDSYLVKV GIANQTTMLKGETEEIGKLVERTMMRKYGVENINDHFISFNTICDATQVRQDAMYNLVEEKLDLMLVVGGWNSSNTSHLQEIAELRGIPSYWIDSEQRIG PGNRIAYKLNHGELAEKENWLPEGPITIGVTSGASTPDKVVGEALVKVLGISGEEGLQLA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G34350		HDR, CLB6, ISPH	CHLOROPLAST BIOGENESIS 6, 4-hy...		Potri.004G150400 [exp]	0	1	Pt-CLB6.1
AT2G18370			Bifunctional inhibitor/lipid-t...		Potri.001G232900 [exp]	2.23	0.9308
AT1G13080		CYP71B2	"cytochrome P450, family 71, s...		Potri.015G028000 [exp]	7.34	0.9111
AT3G03380		DEG7, DEGP7	degradation of periplasmic pro...		Potri.004G088700 [exp]	7.74	0.9004
					Potri.012G120952 [exp]	8.06	0.9119
AT5G52600	MYB	AtMYB82	myb domain protein 82 (.1)		Potri.018G127700 [exp]	8.36	0.9030
AT4G25410	bHLH	bHLH126	basic helix-loop-helix (bHLH) ...		Potri.012G132100 [exp]	9.38	0.9119
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Potri.002G026500 [exp]	9.53	0.9048
AT2G14610		PR-1, PR1, ATPR...	pathogenesis-related gene 1 (....		Potri.001G288600 [exp]	10.81	0.9001	Pt-ATPRB1.4
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Potri.002G025800 [exp]	11.22	0.9035	CYP83F2
AT4G22730			Leucine-rich repeat protein ki...		Potri.001G117800 [exp]	11.35	0.8041

Compare expression of checked genes

Potri.004G150400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.