Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18860 1098 / 0 transducin family protein / WD-40 repeat family protein (.1.2) AT3G49660 89 / 5e-19 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 84 / 3e-17 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT1G49040 83 / 5e-16 SCD1 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3) AT5G08390 81 / 2e-15 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 80 / 4e-15 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G61210 78 / 2e-14 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G11160 77 / 3e-14 Transducin/WD40 repeat-like superfamily protein (.1) AT5G52820 75 / 8e-14 WD-40 repeat family protein / notchless protein, putative (.1) AT5G25150 74 / 3e-13 TAF5 TBP-associated factor 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T125104 [exp] 1324 / 0 AT3G18860 1114 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.009G112184 [exp] 1324 / 0 AT3G18860 1128 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.015G049500 [exp] 89 / 5e-18 AT1G49040 1810 / 0.0 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3) Potri.007G009500 [exp] 86 / 8e-18 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 85 / 1e-17 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 84 / 2e-17 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G060800 [exp] 83 / 4e-16 AT1G49040 1782 / 0.0 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3) Potri.010G255400 [exp] 82 / 5e-16 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G002300 [exp] 82 / 7e-16 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040490 [exp] 1110 / 0 AT3G18860 1103 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10011296 [exp] 1090 / 0 AT3G18860 1089 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10006916 [exp] 96 / 2e-21 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 91 / 1e-19 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 82 / 2e-16 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 79 / 2e-15 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10011224 [exp] 79 / 8e-15 AT1G11160 665 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10018458 [exp] 79 / 1e-14 AT1G11160 668 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10041007 [exp] 77 / 3e-14 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10013452 [exp] 77 / 3e-14 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat CL0186 [poplar] [flax] PF08324 [poplar] [flax] PUL PUL domain CL0186 [poplar] [flax] PF09070 [poplar] [flax] PFU PFU (PLAA family ubiquitin binding)
Representative CDS sequence Show only first row Show all	>Potri.004G150700.1 pacid=42795373 polypeptide=Potri.004G150700.1.p locus=Potri.004G150700 ID=Potri.004G150700.1.v4.1 annot-version=v4.1 ATGGACATGGAAACCGACTTAAAAATTTATCAATTAAGCCACGAGCTTCGCGGCCACGAAGACGACGCTCGCGGGATTTGTGTTTGCGGAAATGCGGGAA TAGCGACGTCGTCGAGGGACAAAACGGTGAGGTACTGGGTGCCCGACCCAACTGACAAACGCAAGTTTGAATTATCAAAAATTCTGCGAGGGCATTCGAG TTTTGTGGGACCATTGGCATGGATTCCGCCGAATGAAGTGTTCTCAGAAGGCGCGATCGTGTCTGGGGGAATGGATACGATGGTTTTTGTTTGGAATTTG AGTAATGGAGAGAAAGTCCATAGCTTGAGTGGTCATCAATTGCAAGTTACTGGTGTTGTTTTGGATGATGAAGATATTGTTTCTTCCTCCGTTGATTGTA CTTTGAGGAAATGGAGGAAAGGTAAAGTTGTTGACTCTTGGGAGGCTCATAAGTCTGCGATCCAATCGATTATTAAGCTGCCGTCCGGCGAGCTTGTTAC AGGTTCAACTGACACAACTTTAAAACTTTGGAAAGGGAAGACATGCTTACACACTTTTGCAGGGCACTCAGATACAGTAAGAGGCTTAGCAAAGATGCAT GGAGTGGGAATTCTTTCTGCATCACATGATGGCTCCATCAGATTATGGGCTTTAACTGGCCAAGTATTGATGGAGATGGTTGGCCATGCTTCCATTGTCT ATTCAGTTGATTCACATGTGTCTGGACTAATTGTTAGTGGTAGTGAAGATTGTTCAGCAAAGATTTGGAAAGATGGAGTCTGTGTTCAGAGCTTAGAGCA TCCTGGTTGTGTTTGGGATGTCAAATTCTTGGAAAATGGTGATATTGTGACAGCATGCTCAGATGGAGTAGTACGTATTTGGACTTCACATCAGGAGAGG ATTGCGGACCCAGTAGATCTTGACTCTTATGTTTCCCAACTTTCTCAATACAAATTAAGCAGGAAGAGGGTTGGGGGATTGAAATTGGAAGATTTACCAG GCCTTGACGCTTTACAGATTCCAGGAACCAGTGATGGGCAGACCAAAATCATCAGAGAAGGGGACAACGGTGTCGCATATGCTTGGAATTTGAGGGAACA GAAGTGGGATAAAATTGGAGAAGTTGTTGATGGACCAGATGATGGCATGAAGCGGCCTGTTCTTGATGGAATTGAATATGATTATGTGTTTGATGTTGAT ATTGGTGATGGAGAGCCTATTCGTAAGTTGCCATACAATCTATCAGATAATCCATATTCGACTGCTGACAAGTGGCTTCTCAAGGAGAATCTTCCTCTTG CCTATCGTCAACAGATTGTAGAGTTTATACTCCAAAATTCTGGCCAAGGTGGCGTTGCACTTGATTCATCATTCCGTGACCCATACACTGGCTCAAATGC TTATATACCCGGAGGATCTTCTAGCATGTCTGAGGTTCCAGCGAAACCAACTTTCAAACATATTCCCAAGAAAGGAATGCTTGTTTTTGACGTGGCTCAA TTTGAAGGGATCCTGAAAAAGCTTACAGAGTTCAACCATTCTTTGCTTTCTGATTCTGACAAAAAGAACCTGTCTTTGTCGGAGCTTGAGATATCAAGAT TGAGTGCAGTTGTAAAAATTTTGAAGGACACATCACATTATCACACTAGTAAATTTGCAGATGCTGACATTGCTTTGCTGCTGAAACTCCTAAAATCTTG GCCTCTGGCTATGATATTTCCAGTTATCGATATTTTGAGGATGCTTGTTCTACACCCGGATGGGGCAACAGTCCTTCTCAAGCACATTGAAGATGAAAAC GATACGTTGATAGAAATGATCAAGAGAGTGGCAACAAATCCTCCACTTCCTCCAAACCTTTTAACGATCACCCGTGCTGTGACTAATCTTTTCAAGAATT CGCACTATCATTACTGGCTTCAAAAGCATCGCAGTGAGATTCTTGATGCTTTTTCAAGTTGTTATTCATCTCCTAATAAGAACTTGCAGTTGTCTTATGC TACCATGATACTCAATTATGCTGTGCTGTTGATTGAAAAGAAAGATCATGAAGGTCAATCACAAGTTCTTTCAGCAGCTCTTGAGATTGTGGAAGAGGAA AATATCGAAGTTGACTCGAAATTCCGGGCTTTAGTTGCCATTGGATCGCTGATGCTTGATGGTCTGGTGAAAAGAATCGCTTTGGACTTTGACGTTGAGA ATGTGGCGAAAACAGCCAAGGCATCTAAAGAAGCCAAAATTGCTGAAGTTGGAGCTGACATTGAATTGCTAACAAAACAGATCTGA
AA sequence Show only first row Show all	>Potri.004G150700.1 pacid=42795373 polypeptide=Potri.004G150700.1.p locus=Potri.004G150700 ID=Potri.004G150700.1.v4.1 annot-version=v4.1 MDMETDLKIYQLSHELRGHEDDARGICVCGNAGIATSSRDKTVRYWVPDPTDKRKFELSKILRGHSSFVGPLAWIPPNEVFSEGAIVSGGMDTMVFVWNL SNGEKVHSLSGHQLQVTGVVLDDEDIVSSSVDCTLRKWRKGKVVDSWEAHKSAIQSIIKLPSGELVTGSTDTTLKLWKGKTCLHTFAGHSDTVRGLAKMH GVGILSASHDGSIRLWALTGQVLMEMVGHASIVYSVDSHVSGLIVSGSEDCSAKIWKDGVCVQSLEHPGCVWDVKFLENGDIVTACSDGVVRIWTSHQER IADPVDLDSYVSQLSQYKLSRKRVGGLKLEDLPGLDALQIPGTSDGQTKIIREGDNGVAYAWNLREQKWDKIGEVVDGPDDGMKRPVLDGIEYDYVFDVD IGDGEPIRKLPYNLSDNPYSTADKWLLKENLPLAYRQQIVEFILQNSGQGGVALDSSFRDPYTGSNAYIPGGSSSMSEVPAKPTFKHIPKKGMLVFDVAQ FEGILKKLTEFNHSLLSDSDKKNLSLSELEISRLSAVVKILKDTSHYHTSKFADADIALLLKLLKSWPLAMIFPVIDILRMLVLHPDGATVLLKHIEDEN DTLIEMIKRVATNPPLPPNLLTITRAVTNLFKNSHYHYWLQKHRSEILDAFSSCYSSPNKNLQLSYATMILNYAVLLIEKKDHEGQSQVLSAALEIVEEE NIEVDSKFRALVAIGSLMLDGLVKRIALDFDVENVAKTAKASKEAKIAEVGADIELLTKQI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G18860			transducin family protein / WD...		Potri.004G150700 [exp]	0	1
AT5G18940			Mo25 family protein (.1.2)		Potri.010G028700 [exp]	3.87	0.8781
AT5G45660			unknown protein		Potri.011G076600 [exp]	10.67	0.8191
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Potri.009G087200 [exp]	11.83	0.8335
AT3G08510		ATPLC2	phospholipase C 2 (.1.2.3)		Potri.008G068400 [exp]	12.84	0.8304	Pt-PLC1.2
AT2G04940			scramblase-related (.1)		Potri.015G079500 [exp]	18.00	0.7725
AT2G47500			P-loop nucleoside triphosphate...		Potri.005G021100 [exp]	18.16	0.8200
AT3G17900			unknown protein		Potri.008G194632 [exp]	19.62	0.7991
AT5G57830			Protein of unknown function, D...		Potri.006G181300 [exp]	20.19	0.8216
AT1G14570			UBX domain-containing protein ...		Potri.008G142800 [exp]	23.45	0.7292
AT5G13560			unknown protein		Potri.010G212900 [exp]	26.05	0.8141

Compare expression of checked genes

Potri.004G150700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.