Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19040 256 / 1e-83 ATIPT5 Arabidopsis thaliana ISOPENTENYLTRANSFERASE 5, isopentenyltransferase 5 (.1) AT3G23630 249 / 5e-81 ATIPT7 ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 7, isopentenyltransferase 7 (.1) AT3G63110 237 / 5e-76 ATIPT3 isopentenyltransferase 3 (.1) AT3G19160 216 / 7e-68 PGA22, ATIPT8 isopentenyltransferase 8, ATP/ADP isopentenyltransferases (.1) AT1G68460 202 / 2e-62 ATIPT1 Arabidopsis thaliana isopentenyltransferase 1, isopentenyltransferase 1 (.1) AT4G24650 184 / 1e-55 ATIPT4 ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 4, isopentenyltransferase 4 (.1) AT1G25410 176 / 2e-52 ATIPT6 ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 6, isopentenyltransferase 6 (.1) AT2G27760 113 / 9e-28 IPPT, ATIPT2 tRNAisopentenyltransferase 2 (.1) AT5G20040 92 / 2e-20 ATIPT9 ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 9, isopentenyltransferase 9 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G033300 [exp] 470 / 1e-168 AT5G19040 235 / 3e-76 Arabidopsis thaliana ISOPENTENYLTRANSFERASE 5, isopentenyltransferase 5 (.1) Potri.014G139300 [exp] 268 / 4e-88 AT3G63110 356 / 7e-123 isopentenyltransferase 3 (.1) Potri.008G202200 [exp] 262 / 5e-86 AT5G19040 396 / 9e-139 Arabidopsis thaliana ISOPENTENYLTRANSFERASE 5, isopentenyltransferase 5 (.1) Potri.010G030500 [exp] 261 / 2e-85 AT5G19040 365 / 1e-126 Arabidopsis thaliana ISOPENTENYLTRANSFERASE 5, isopentenyltransferase 5 (.1) Potri.008G121500 [exp] 198 / 1e-60 AT1G68460 348 / 6e-119 Arabidopsis thaliana isopentenyltransferase 1, isopentenyltransferase 1 (.1) Potri.010G123801 [exp] 190 / 2e-57 AT1G68460 338 / 4e-115 Arabidopsis thaliana isopentenyltransferase 1, isopentenyltransferase 1 (.1) Potri.009G147600 [exp] 117 / 3e-29 AT2G27760 544 / 0.0 tRNAisopentenyltransferase 2 (.1) Potri.001G376600 [exp] 96 / 7e-22 AT5G20040 568 / 0.0 ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 9, isopentenyltransferase 9 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028015 [exp] 257 / 9e-84 AT3G63110 327 / 3e-111 isopentenyltransferase 3 (.1) Lus10012372 [exp] 251 / 4e-81 AT3G63110 332 / 5e-113 isopentenyltransferase 3 (.1) Lus10004428 [exp] 236 / 6e-76 AT5G19040 372 / 2e-129 Arabidopsis thaliana ISOPENTENYLTRANSFERASE 5, isopentenyltransferase 5 (.1) Lus10034025 [exp] 234 / 3e-75 AT5G19040 378 / 7e-132 Arabidopsis thaliana ISOPENTENYLTRANSFERASE 5, isopentenyltransferase 5 (.1) Lus10034334 [exp] 197 / 1e-60 AT1G68460 267 / 3e-88 Arabidopsis thaliana isopentenyltransferase 1, isopentenyltransferase 1 (.1) Lus10034333 [exp] 194 / 4e-59 AT1G68460 258 / 1e-83 Arabidopsis thaliana isopentenyltransferase 1, isopentenyltransferase 1 (.1) Lus10034332 [exp] 185 / 3e-55 AT1G68460 304 / 3e-101 Arabidopsis thaliana isopentenyltransferase 1, isopentenyltransferase 1 (.1) Lus10006281 [exp] 122 / 6e-31 AT2G27760 493 / 2e-172 tRNAisopentenyltransferase 2 (.1) Lus10020566 [exp] 121 / 1e-30 AT2G27760 491 / 1e-171 tRNAisopentenyltransferase 2 (.1) Lus10012051 [exp] 81 / 2e-16 AT5G20040 505 / 1e-177 ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 9, isopentenyltransferase 9 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF01715 [poplar] [flax] IPPT IPP transferase
Representative CDS sequence Show only first row Show all	>Potri.004G150900.1 pacid=42795761 polypeptide=Potri.004G150900.1.p locus=Potri.004G150900 ID=Potri.004G150900.1.v4.1 annot-version=v4.1 ATGGAAATGATTCCTCTACAACCAAAGCTTGCCTCAAGTATGAGAACTATGCCAATGGCTGCCTCTCTCCCCTTAAGAATGGAGCGGGAAATCAGGTTCC AGTTTCAATGTTATTGGACTAGGCACCGCAACAACCTCCAACAGATCACTAGTTCACTTTATTCCATTGACGACAAGAAGAAGCAAAAAGCTTTGTTCGT AATGGGAACAACTGCCACTGGAAAATCAAAACTCTCCATTGATTTAGCCACTCATTTTCAAGGTGAAATCATCAATTCAGACAAAATTCAGGTTTACAAG GGCCTTGACATGTTGACCAACAAAATTTCGGAAATTGAACGCCGAGGTGTGCCTCACCATTTGCTAGGATTTGTGGAACCTGGAGAAGAGTTTACCACAC AAGATTTTTGCAATCATGTACACAAGGCCATGAAACATATTACAGGGGATGGAAGCATCCCCATTATCGCCGGCGGCTCGAATAGATACATCGAAGCACT CGTCGAGGATCCGCTTTTCAACTTCAAGGATAGTTATGATACTTGTTTTCTATGGGTGGATGTTGCCTTGCCAATCTTATTTGATCGCGCAGCAAAAAGG GTTGATGAGATGCTTGATGCTGGTCTTGTTGAAGAGGTTCGAGGTATGTTTATTCCAGGGATAGATCACAATAGCGGGATTTGGCGGGCTATTGGGATTG CAGAGATGGAACCATATTTTCAAGCTGAAATGGAAATGGCTGATGAGGTCACCATGAAAATATTGCTTGAAACTGGTATTAAAGAAATGAAAGAAAATAC CAAGAAGCTAATCAATAAACAACTAACGAAAATCAAATATTTGGCTAACAAGAAAGGATGGAAATTCCATCGGATTGATGCTACTTGTGTGTATGAGAGA AGTGCAAAAGTTGATGAAGATGTTTGGGACAAGAAGGTTTTGAGACCTAGCTTGGAGATAGTTACTAATTTTCTCCGGGAAGACGAGAAAGCAGAAGAAG TGGCAGACAGTTTTCTAGTTACAAGCTAG
AA sequence Show only first row Show all	>Potri.004G150900.1 pacid=42795761 polypeptide=Potri.004G150900.1.p locus=Potri.004G150900 ID=Potri.004G150900.1.v4.1 annot-version=v4.1 MEMIPLQPKLASSMRTMPMAASLPLRMEREIRFQFQCYWTRHRNNLQQITSSLYSIDDKKKQKALFVMGTTATGKSKLSIDLATHFQGEIINSDKIQVYK GLDMLTNKISEIERRGVPHHLLGFVEPGEEFTTQDFCNHVHKAMKHITGDGSIPIIAGGSNRYIEALVEDPLFNFKDSYDTCFLWVDVALPILFDRAAKR VDEMLDAGLVEEVRGMFIPGIDHNSGIWRAIGIAEMEPYFQAEMEMADEVTMKILLETGIKEMKENTKKLINKQLTKIKYLANKKGWKFHRIDATCVYER SAKVDEDVWDKKVLRPSLEIVTNFLREDEKAEEVADSFLVTS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19040		ATIPT5	Arabidopsis thaliana ISOPENTEN...		Potri.004G150900 [exp]	0	1
					Potri.019G108100 [exp]	6.00	0.6362
AT5G18520			Lung seven transmembrane recep...		Potri.013G049500 [exp]	8.94	0.5529
					Potri.007G075066 [exp]	8.94	0.5898
AT5G28780			PIF1 helicase (.1)		Potri.009G007400 [exp]	15.96	0.5566
AT5G01710			methyltransferases (.1)		Potri.013G153300 [exp]	19.89	0.5802
					Potri.003G069802 [exp]	22.75	0.4951
AT3G24650	B3	SIS10, ABI3	SUGAR INSENSITIVE 10, ABSCISIC...		Potri.002G252000 [exp]	40.98	0.5372	ABI3.1
AT5G39280		ATEXP23, ATHEXP...	EXPANSIN 23, expansin A23 (.1)		Potri.017G092700 [exp]	41.89	0.4889	ATEXPA21.1,PtEXPA27
					Potri.006G047250 [exp]	42.21	0.4997
AT1G44414			unknown protein		Potri.002G083100 [exp]	49.77	0.4744

Compare expression of checked genes

Potri.004G150900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.