Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36750 311 / 4e-107 Quinone reductase family protein (.1) AT4G27270 244 / 2e-81 Quinone reductase family protein (.1) AT5G54500 236 / 1e-78 FQR1 flavodoxin-like quinone reductase 1 (.1.2) AT5G58800 215 / 3e-70 Quinone reductase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G029600 [exp] 315 / 8e-109 AT4G36750 362 / 3e-127 Quinone reductase family protein (.1) Potri.005G126200 [exp] 305 / 9e-105 AT4G36750 361 / 4e-127 Quinone reductase family protein (.1) Potri.001G410700 [exp] 241 / 2e-80 AT4G27270 345 / 1e-122 Quinone reductase family protein (.1) Potri.011G033100 [exp] 241 / 2e-80 AT4G27270 352 / 1e-125 Quinone reductase family protein (.1) Potri.004G028900 [exp] 239 / 1e-79 AT4G27270 352 / 2e-125 Quinone reductase family protein (.1) Potri.009G044400 [exp] 239 / 1e-79 AT5G58800 322 / 3e-113 Quinone reductase family protein (.1.2) Potri.011G129400 [exp] 235 / 5e-78 AT4G27270 342 / 2e-121 Quinone reductase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014325 [exp] 309 / 2e-106 AT4G36750 370 / 2e-130 Quinone reductase family protein (.1) Lus10041718 [exp] 309 / 3e-106 AT4G36750 357 / 3e-125 Quinone reductase family protein (.1) Lus10026035 [exp] 308 / 3e-106 AT4G36750 371 / 4e-131 Quinone reductase family protein (.1) Lus10040486 [exp] 296 / 1e-101 AT4G36750 291 / 6e-100 Quinone reductase family protein (.1) Lus10018401 [exp] 240 / 5e-80 AT4G27270 342 / 3e-121 Quinone reductase family protein (.1) Lus10007612 [exp] 232 / 2e-76 AT4G27270 329 / 1e-115 Quinone reductase family protein (.1) Lus10005862 [exp] 225 / 3e-74 AT5G58800 290 / 5e-101 Quinone reductase family protein (.1.2) Lus10006748 [exp] 224 / 1e-73 AT4G27270 323 / 5e-114 Quinone reductase family protein (.1) Lus10020076 [exp] 218 / 2e-71 AT4G27270 314 / 2e-110 Quinone reductase family protein (.1) Lus10024032 [exp] 199 / 1e-64 AT4G36750 248 / 5e-84 Quinone reductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0042 [poplar] [flax] Flavoprotein PF03358 [poplar] [flax] FMN_red NADPH-dependent FMN reductase
Representative CDS sequence Show only first row Show all	>Potri.004G151100.1 pacid=42794369 polypeptide=Potri.004G151100.1.p locus=Potri.004G151100 ID=Potri.004G151100.1.v4.1 annot-version=v4.1 ATGGGTAAAGGTGGTGGGTGTGTACCAAGCAAGAGAAGACCTCCTATTGAGGTACCTGATCAAGAACCTTCTCTCCAAGAAACAAACTCTGCTATTTCCT CACAAAACCAAATCACATCCACAAACACAACGATCCCAGTTCAATATAATCCCACACTAGCAGTTAAAAAGTGCAAGATTTTTATTATTTTTTACTCAAT GTATGCTCATGTGGAGTTAATGGCAAGAAGAATAAAGAAAGGCGTGGATTCCATTGAAGGGGTTGAAGGGGTTTTGTATAGGGTCCCAGAGACGTTGCTA CAGGGTACTTTAGAGCAAATGAAGGTACCCCAGAAAGGAAATGATGTGCCTTTGATAAAAGTTGATGAGTTGGTTAATGCTGATGGCTTCTTGTTTGGAT TTCCTACAAGATTTGGGTCCATGGCAGCTCAAATGAAGGCTTTTTTTGACTCGACTCATGAGTTATGGATGAAGCAGAAGCTTGCAGGTGTGCCTGCCGG GTTCTTTGTGAGCACCGGCACACAGGGTGGTGGGCAGGAGACCACTGCCTGGACAGCAATCACTCAGTTAGTCCATCATGGGATGGTCTTTGTCCCTATC GGTTACACCTTTGGAGCTGGAATGTTCAGAATGGATTCCATTAGAGGAGGATCTCCCTATGGTGCAGGAGTCCTTTCTGGAGATGGCACAAGAGAGCCAA GTGCAACAGAACTAGCTCTTGCAGAGCACCAGGGAAAATACATGGCTACAGTAGTTAAAAGATTTGCAAGGCCCTTTTCACTGGCCCCTGGTGAAAAACA CAACTAG
AA sequence Show only first row Show all	>Potri.004G151100.1 pacid=42794369 polypeptide=Potri.004G151100.1.p locus=Potri.004G151100 ID=Potri.004G151100.1.v4.1 annot-version=v4.1 MGKGGGCVPSKRRPPIEVPDQEPSLQETNSAISSQNQITSTNTTIPVQYNPTLAVKKCKIFIIFYSMYAHVELMARRIKKGVDSIEGVEGVLYRVPETLL QGTLEQMKVPQKGNDVPLIKVDELVNADGFLFGFPTRFGSMAAQMKAFFDSTHELWMKQKLAGVPAGFFVSTGTQGGGQETTAWTAITQLVHHGMVFVPI GYTFGAGMFRMDSIRGGSPYGAGVLSGDGTREPSATELALAEHQGKYMATVVKRFARPFSLAPGEKHN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G36750			Quinone reductase family prote...		Potri.004G151100 [exp]	0	1
AT5G23370			GRAM domain-containing protein...		Potri.005G088300 [exp]	1.73	0.9106
AT5G23370			GRAM domain-containing protein...		Potri.005G088400 [exp]	2.00	0.8841
AT2G26520			unknown protein		Potri.004G144400 [exp]	2.64	0.8223
AT2G39705		RTFL8, DVL11	DEVIL 11, ROTUNDIFOLIA like 8 ...		Potri.010G201700 [exp]	5.47	0.8125
AT4G23880			unknown protein		Potri.004G151000 [exp]	6.70	0.8167
					Potri.004G135050 [exp]	7.21	0.7839
AT5G48060			C2 calcium/lipid-binding plant...		Potri.001G271400 [exp]	9.38	0.8286
AT1G05760		RTM1	restricted tev movement 1, Man...		Potri.010G144900 [exp]	9.79	0.8103	Pt-RTM1.1
AT1G29160	DOF	AtDof1. 5	Dof-type zinc finger DNA-bindi...		Potri.004G056900 [exp]	10.39	0.8251	Pt-DOF2.2
AT3G25400			unknown protein		Potri.002G235000 [exp]	14.59	0.8344

Compare expression of checked genes

Potri.004G151100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.