Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18840 772 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT2G13600 374 / 2e-120 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G22070 365 / 1e-115 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G68930 333 / 7e-104 pentatricopeptide (PPR) repeat-containing protein (.1) AT4G02750 329 / 4e-102 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G16860 315 / 5e-96 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G08070 309 / 6e-95 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 312 / 8e-95 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G29760 308 / 9e-95 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G25360 309 / 1e-94 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G152000 [exp] 1345 / 0 AT3G18840 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.009G113500 [exp] 1219 / 0 AT3G18840 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.010G136200 [exp] 391 / 4e-126 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.007G085500 [exp] 358 / 4e-113 AT2G22070 1088 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.006G245300 [exp] 339 / 3e-105 AT3G22690 570 / 0.0 unknown protein Potri.012G018800 [exp] 336 / 5e-104 AT2G13600 463 / 3e-152 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G104700 [exp] 331 / 1e-103 AT2G13600 834 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G075200 [exp] 331 / 1e-103 AT1G77010 835 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G027800 [exp] 327 / 4e-101 AT1G25360 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001445 [exp] 517 / 9e-179 AT3G18840 458 / 5e-156 Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10016425 [exp] 376 / 8e-120 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10030908 [exp] 361 / 3e-110 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10000213 [exp] 347 / 7e-110 AT2G13600 435 / 8e-144 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030581 [exp] 358 / 5e-109 AT1G68930 910 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10009269 [exp] 338 / 1e-106 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019731 [exp] 334 / 2e-104 AT2G13600 436 / 3e-143 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018223 [exp] 324 / 1e-100 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040680 [exp] 321 / 2e-99 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015898 [exp] 312 / 5e-96 AT2G13600 899 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.004G151500.1 pacid=42795358 polypeptide=Potri.004G151500.1.p locus=Potri.004G151500 ID=Potri.004G151500.1.v4.1 annot-version=v4.1 ATGAGGTCCTTAAAAGATGGACTGATGCGACATGTCCGATCCATAAAGTCTGGTTTCACACTACCAATCTTAACCTCAAATCAACTCGTTCATTTATACT CCAAGCATTGCCTTATAAATGAAGCCCAGAAACTGTTCGATGAAATGCCTCAAAGAAACACTTACTCCTGGAACACTATAATATCTGCCCACATAAAATC CCAAAACTTAGCACAGGCAAAATCCATTTTTGATTCTGCTTCTGTTAGGGATTTGGTCACTTATAATTCTATGTTATCGGGTTATGTTAGTGTGGATGGA TATGAAAGAAATGCCCTTGAATTGTTTGTTGAAATGCAAAGTAAAAGAAATGAGATTGAGATTGATGATCTTACTATTACAAGCATGGTTAACTTGTTTT CTAAGTTATGTAATTCGTGTTATGGGAGGCAATTGCATTCATATATGGTGAAAACCGGTAATGATAGAAGTGGGTTTGTTGTGAGTTCTTTGATTGACAT GTATTCTAAATGTGGGTGTTTTAAAGAGGCTTGTCAGGTATTTAAAGGTTGTGAAAGAGAAGGAGGTTTTGATTTGGTCTCAAAGAATGCGATGGTGGCA GCGTATTGTAGAGAAGGGGATATGGAAATGGCTTTGAGGTTGTTTTGGAGGGAAAGTGAGTTGAATGATTCGGTGTCATGGAATACATTGATTTCGGGTT ATGTTCAAAATGGTTATCCAGTGGAGGCACTGAAGTTGTTTGTGTGTATGGGGGAGAATGGTGTTAAATGGAATGAACATACTTTGGGTAGTGTTTTAAG TGCTTGTGCTGATTTAAGGAACTTGAAGATTGGCAAGGAAATGCATGCTTGGATTTTGAAGAATGGACTGGGTTCGAGTGCTTTTGTAGAAAGTGGCATT GTTGATGTTTACTGCAAGTGTGGGAATATGAAGTATGCAGAGTCATTGCATTTGACAAGGGGGGTCAGAAGTTCCTTCTCCATCACTTCAATGATTGTGG GGTATTCGTCACAAGGAAACATGGTGGAAGCTTGTAGGCTTTTTGATTCTTTGGAAGAGAAGAATTCTATTGTTTGGGCTGCATTATTTAGTGGTTATGT CAAATTGAAGCAATGTGAAGCTTTTTTTGAGCTTCTACGAGAGTATATAGCCAAGGAAGCTGCGATTCCTGATGCTTTGATCCTTATCAATGCATTTAAC GTGTGTGCATTCCAAGCTGCCCTTGGTCCTGGGAAGCAAATCCATGGTTATGTATTCAGAATGGGGATTGAAATGGACATGAAGACGACTACAGCTATGA TTGATATGTACTCAAAATGTGGAAGTATACCATACGCAGAAAAACTGTTCCTGAAAGTTATTGAAAGAGATTTAGTCCTTTACAATGTTATGCTTGCTGG TTATGCTCATCACGGGCATGAGATTAAAGCTATAAATTTGTTTCAGGAAATGTTGGAGAGAGGAGTTGGACCAGATGCCGTTACTTTTGTTGCACTTCTG TCAGCTTGCCGTCACCGTGGATTGGTTGATTTGGGTGAAAAAACATTTTATTCCATGACAGAAGATTATCACATACTGCCTGAAACTGATCACTATGCAT GCATGATTGATCTTTATGGAAGGGCTAGCCAACTAGAAAAGATGGTCCTGTTCATGCAAAGAATTCCTGTGGAGCATCAGGATGCCGCTGTCGTTGGGGC ATTTTTTAATGCATGCAGGCTAAATAATAACACAGAATTAGCAAAAGAGGCAGAGGAGAAACTGTTAAATATTGAAGGTGATAGTGGAGCTCGTTATGTG CAGTTGGCTAATGTTTATGCTGCAGAAGGGAACTGGGCTGAGATGGGGAGGATTAGTAGGGAGATGAGAGGAAAGGAGGCCAAGAAGTTTGCTGGTTGCA GTTGGGTATACTTGGATAATGAGGTCCATTCATTTACCTCTGGTGATAGAACCCATACAAAAGCAGAGTCTATCTATTCGAAGCTGGAGTTCTTGAAGGC AAAACTATATGAAATCGCTGGGGCATTCCGTTAG
AA sequence Show only first row Show all	>Potri.004G151500.1 pacid=42795358 polypeptide=Potri.004G151500.1.p locus=Potri.004G151500 ID=Potri.004G151500.1.v4.1 annot-version=v4.1 MRSLKDGLMRHVRSIKSGFTLPILTSNQLVHLYSKHCLINEAQKLFDEMPQRNTYSWNTIISAHIKSQNLAQAKSIFDSASVRDLVTYNSMLSGYVSVDG YERNALELFVEMQSKRNEIEIDDLTITSMVNLFSKLCNSCYGRQLHSYMVKTGNDRSGFVVSSLIDMYSKCGCFKEACQVFKGCEREGGFDLVSKNAMVA AYCREGDMEMALRLFWRESELNDSVSWNTLISGYVQNGYPVEALKLFVCMGENGVKWNEHTLGSVLSACADLRNLKIGKEMHAWILKNGLGSSAFVESGI VDVYCKCGNMKYAESLHLTRGVRSSFSITSMIVGYSSQGNMVEACRLFDSLEEKNSIVWAALFSGYVKLKQCEAFFELLREYIAKEAAIPDALILINAFN VCAFQAALGPGKQIHGYVFRMGIEMDMKTTTAMIDMYSKCGSIPYAEKLFLKVIERDLVLYNVMLAGYAHHGHEIKAINLFQEMLERGVGPDAVTFVALL SACRHRGLVDLGEKTFYSMTEDYHILPETDHYACMIDLYGRASQLEKMVLFMQRIPVEHQDAAVVGAFFNACRLNNNTELAKEAEEKLLNIEGDSGARYV QLANVYAAEGNWAEMGRISREMRGKEAKKFAGCSWVYLDNEVHSFTSGDRTHTKAESIYSKLEFLKAKLYEIAGAFR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G18840			Tetratricopeptide repeat (TPR)...		Potri.004G151500 [exp]	0	1
AT3G18840			Tetratricopeptide repeat (TPR)...		Potri.004G152000 [exp]	1.00	0.9114
AT5G13230			Tetratricopeptide repeat (TPR)...		Potri.003G164900 [exp]	5.74	0.8420
AT4G21065			Tetratricopeptide repeat (TPR)...		Potri.017G001000 [exp]	8.36	0.8181
AT1G06950		ATTIC110, TIC11...	ARABIDOPSIS THALIANA TRANSLOCO...		Potri.013G154300 [exp]	10.67	0.8498
AT2G01440			DEAD/DEAH box RNA helicase fam...		Potri.010G112500 [exp]	14.31	0.8240
AT3G15353		ATMT3, MT3	metallothionein 3 (.1.2)		Potri.011G118900 [exp]	19.05	0.8101
AT4G32551		RON2, LUG	ROTUNDA 2, LEUNIG, LisH dimeri...		Potri.006G248100 [exp]	19.13	0.8236	LUG.1
AT5G53060			RNA-binding KH domain-containi...		Potri.002G112200 [exp]	20.19	0.7864
					Potri.018G138206 [exp]	21.44	0.8274
AT1G79560		EMB36, EMB156, ...	EMBRYO DEFECTIVE 36, EMBRYO DE...		Potri.010G171300 [exp]	26.83	0.8106

Compare expression of checked genes

Potri.004G151500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.