Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18830 642 / 0 ATPMT5, AtPLT5 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) AT2G16120 595 / 0 ATPMT1, AtPLT1 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 1, polyol/monosaccharide transporter 1 (.1) AT2G16130 590 / 0 ATPMT2, AtPLT2 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 2, polyol/monosaccharide transporter 2 (.1) AT4G36670 511 / 1e-178 AtPMT6, AtPLT6 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) AT2G18480 488 / 2e-169 AtPLT3 Major facilitator superfamily protein (.1) AT2G20780 407 / 2e-137 AtPLT4 Major facilitator superfamily protein (.1) AT2G43330 194 / 9e-56 ATINT1 inositol transporter 1 (.1) AT5G16150 188 / 3e-53 PGLCT, GLT1 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) AT5G59250 181 / 2e-50 Major facilitator superfamily protein (.1) AT2G48020 169 / 9e-47 Major facilitator superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G152300 [exp] 904 / 0 AT3G18830 625 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.009G113600 [exp] 823 / 0 AT3G18830 717 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.007G027900 [exp] 521 / 0 AT4G36670 638 / 0.0 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) Potri.006G158700 [exp] 442 / 1e-151 AT3G18830 477 / 6e-165 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.013G135200 [exp] 418 / 8e-142 AT2G20780 747 / 0.0 Major facilitator superfamily protein (.1) Potri.004G039100 [exp] 400 / 9e-135 AT2G20780 647 / 0.0 Major facilitator superfamily protein (.1) Potri.007G126800 [exp] 192 / 4e-55 AT2G43330 710 / 0.0 inositol transporter 1 (.1) Potri.004G097800 [exp] 192 / 1e-54 AT5G16150 656 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Potri.017G032200 [exp] 188 / 2e-53 AT2G43330 743 / 0.0 inositol transporter 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042339 [exp] 726 / 0 AT3G18830 735 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10040482 [exp] 722 / 0 AT3G18830 722 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10011288 [exp] 721 / 0 AT3G18830 721 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10011287 [exp] 664 / 0 AT3G18830 692 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10035255 [exp] 658 / 0 AT3G18830 656 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10034623 [exp] 654 / 0 AT3G18830 652 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10006971 [exp] 624 / 0 AT3G18830 631 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10041731 [exp] 545 / 0 AT4G36670 664 / 0.0 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) Lus10026032 [exp] 508 / 2e-177 AT4G36670 645 / 0.0 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) Lus10014323 [exp] 511 / 1e-173 AT5G66740 650 / 0.0 Protein of unknown function (DUF620) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF07690 [poplar] [flax] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Potri.004G151725.1 pacid=42794368 polypeptide=Potri.004G151725.1.p locus=Potri.004G151725 ID=Potri.004G151725.1.v4.1 annot-version=v4.1 ATGTCTGCAGGTCTAAACTCAGAAAGGGATGTCAATCCTAGCCAACCCACAACAGAGAAAACACTAGCAGATTTTGATCCTGTAAAGAAACCAAAAGGAA ACAAATTTGCTTTTGCTTGCGCAATCCTAGCTTCCATGGCTTCAATCTTACTTGGTTATGATATCGGAGTAATGAGTGGAGCCAAGGACTACATCAAAAT TGACCTTAAACTCAGTGACACGCAAGTAGGATTACTTGTGGGAACTCTCAACTGGTACTCTCTTGTTGGCTCAGCCGCTGCTGGCGTGACCTCTGACTGG ATTGGTCGTCGATACACTATTGTGGTGGCAGGAGCCGTTTTCTTTGCTGGAGCTCTACTCATGGGATTTTCCACAAATTATGCATTTCTCATGGTTGCTC GCTTTGTTACTGGTATTGGTGTCGGTTTTGCCCTCATGATTGCCCCTGTTTACACCGCTGAAGTTTCGCCAGCTTCTTCTCGTGGATTTCTCACCTCATT CCCAGAAGTATTCATCAATGCTGGGATCTTAATAGGATATGTATCCAATTATGCTTTCTCTAAGCTCCCAACTAACTTAGGTTGGCGAATCATGCTTGGA GTTGGAGCAATTCCTTCAGTTTTCTTAGCTTTGGTGGTTATAGGCATGCCCGAGTCTCCACGTTGGCTAGTCATGCAAGGTCGACTCGGTGATGCTAGGA AAGTTCTTGACAAAACCTCCGACACTAAAGAAGAATCTCAACAGAGATTGTCAGACATAAAAGAAGCCGCCGGAATCCCTCAAGATTGCAACGATGACGC TGTCCGTGTGCAAAAAAAGAGTCACGGCGAAGGTGTTTGGAAAGAATTATTCATTCATCCCACACGTCCTGTTCGTCACATCCTGCTTTGTGTGATCGGT ATTCATTTCTTCCAACAAGCTTCAGGAATAGACGCGGTCGTTTTGTACAGCACCAACATCTTCGAAAAGGCCGGAATCACATCATCCAATGATAAATTAC TGGCAACTGTAGCGGTTGGATTCACCAAGACCCTTTTTATCTTAGTGGCCACATTCTTTCTAGATAGGATCGGGCGACGGCCGTTGCTCTTAAGTAGTGT TGGGGGTATGGTACTATCCCTAGCAACCCTCGGATTCGGGCTGACAATAATTGATCATTCACATGAGAAACTACCATGGGCAGTTGCCTTATCAATCGCT ATGGTGTTAGCTTTTGTTGCATTCTTCTCCATAGGAATGGGACCGATAGCTGGGGTTTATAGTTCAGAGATTTTCCCGTTGAGATTACGCGCTCAGGGGA TAGGTATGGGAGTGGCCGTGAATAGAGTGACAAGTGGGGTAATAACTACAACTTTTATTATGCTCTACAAGGCTATATCTATTGGTGGGGCCTTTTTCCT GTTCGCAGGAATTGCAACAGTGGCTTGGGTATTCTTTTTTGCATGTTATCCTGAGACACGAGGTAGAACTTTAGAGGACATGGAAGTGCTTTTTGGTAAT TTTATCAAGTGA
AA sequence Show only first row Show all	>Potri.004G151725.1 pacid=42794368 polypeptide=Potri.004G151725.1.p locus=Potri.004G151725 ID=Potri.004G151725.1.v4.1 annot-version=v4.1 MSAGLNSERDVNPSQPTTEKTLADFDPVKKPKGNKFAFACAILASMASILLGYDIGVMSGAKDYIKIDLKLSDTQVGLLVGTLNWYSLVGSAAAGVTSDW IGRRYTIVVAGAVFFAGALLMGFSTNYAFLMVARFVTGIGVGFALMIAPVYTAEVSPASSRGFLTSFPEVFINAGILIGYVSNYAFSKLPTNLGWRIMLG VGAIPSVFLALVVIGMPESPRWLVMQGRLGDARKVLDKTSDTKEESQQRLSDIKEAAGIPQDCNDDAVRVQKKSHGEGVWKELFIHPTRPVRHILLCVIG IHFFQQASGIDAVVLYSTNIFEKAGITSSNDKLLATVAVGFTKTLFILVATFFLDRIGRRPLLLSSVGGMVLSLATLGFGLTIIDHSHEKLPWAVALSIA MVLAFVAFFSIGMGPIAGVYSSEIFPLRLRAQGIGMGVAVNRVTSGVITTTFIMLYKAISIGGAFFLFAGIATVAWVFFFACYPETRGRTLEDMEVLFGN FIK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Potri.004G151725 [exp]	0	1
AT1G03430		AHP5	histidine-containing phosphotr...		Potri.004G185900 [exp]	1.41	0.9472
AT3G52740			unknown protein		Potri.009G163900 [exp]	8.24	0.9390
AT1G78510		SPS1	solanesyl diphosphate synthase...		Potri.001G380500 [exp]	8.30	0.9436
					Potri.002G109400 [exp]	9.38	0.9334
AT1G71090			Auxin efflux carrier family pr...		Potri.004G093200 [exp]	10.00	0.9199
AT3G51860		CAX1-LIKE, ATHC...	cation exchanger 3 (.1)		Potri.016G115500 [exp]	10.48	0.9319	CAX3.2
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.019G007400 [exp]	11.22	0.9332
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.019G011400 [exp]	11.83	0.9289
					Potri.005G182750 [exp]	12.04	0.9380
AT1G07030			Mitochondrial substrate carrie...		Potri.016G125200 [exp]	15.19	0.9193

Compare expression of checked genes

Potri.004G151725 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.