Plant FIBer expression Database

Potri.004G152100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G49350 392 / 6e-135 pfkB-like carbohydrate kinase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G151600
[exp]
823 / 0 AT1G49350 389 / 1e-133 pfkB-like carbohydrate kinase family protein (.1)
Potri.011G114100
[exp]
42 / 0.0007 AT1G17160 474 / 8e-168 pfkB-like carbohydrate kinase family protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010290
[exp]
471 / 7e-165 AT1G49350 354 / 6e-120 pfkB-like carbohydrate kinase family protein (.1)
Lus10009862
[exp]
360 / 1e-122 AT1G49350 291 / 2e-96 pfkB-like carbohydrate kinase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0118 Ribokinase PF00294 PfkB pfkB family carbohydrate kinase
Representative CDS sequence
>Potri.004G152100.2 pacid=42795306 polypeptide=Potri.004G152100.2.p locus=Potri.004G152100 ID=Potri.004G152100.2.v4.1 annot-version=v4.1
ATGGAAAACAGTGCACAGAGGAGATTGGAACGTGTTTCTGGGCACCTGTTGTCTCCGATTGAAGTCAATAATGGTCTTTCCCAGGTTTTAATAAAAGGTG
CGCATGGAAAACATGAGGAAGAAGGAGACCCAGTAGTTATAGGAGGCATGGTATTGGATATACATGCAACCCCTTCACTCCCTCTAAATCCTAGAACCAC
CACTCCTGGGAAGGTCCATTATGTACTAGGGGGTGTAGCAAGGAATATTGCTGAGTGTATGTCAAAGCTAGGAACTAAGCCTTATATGATTAGTGCCCTG
GGAAATGACATGGCAGGCAAGCTGCTGTTGGAGCATTGGAATTCTGCGAGCCTATCTACAGAAGGCATTATGAAGCACCAAGATATCAAGACTCCTGTCA
TATGCAACATATTTGACACTGAAGGAGAGTTGGCAGCTGCTGTTGCTAGTGTGGAAGCAGTTGAAAAGTTCCTAACTTCTTCGTGGATTCAGCAATCAAA
GCAAAATATATTTTGTGCTCCTGTCATGATGGTTGATGCAAATCTAAGTCTCCCAGCTTTAGAAGCTTCTTGCCAATTGGCAGCAGAATCCAACACCCCA
GTTTGGTTTGAGCCTGTTTCAGTGGCTAAATCTAGAAGAATTGTCTCAGTTGCTAAGTATGTAACTTTTGCTTCACCTAATGAAGATGAGCTTATCGCCA
TGGCGAATGCTTTATCTCATGAAAATATGTTTCGTCACATTGAAAGGGATTCCAACAGTAGGTGTTCAGTCGAATCTTTGTTCCAATTTTTGAAACCGGC
AATCCTGGTTTTGCTAGAGAAGGGTATCAAGATAGTTGCCGTGACCCTTGGTGCAGATGGCGTGTTCTTATGTTCTAGAGGACCAAACGTAGTGAGATTT
AGTTTGGATAGAACCAAAAAATATGGAGTCAGTGGACAGTTATATGATAAAGTGGTGTCCAGCTGTCCTTCAAGTAGATTTTCTGGTGCTCTGCAGATTG
AGAGAAGCTCTCATCTTTTTTCTGTACATTTTCCTGCACTTCCTGCATCAGTTGTGAGGCTTACGGGGGCTGGTGACTGCTTGGTTGGTGGTACACTTGC
TTCTCTCTGTTCAGGTTTAGATATTATGCAGAGCATTGCAGTCGGTATAGCAGCAGCCAAATCTGCTGTGGAGGGAGAGGCGAATGTGCCTTCAGAATTT
AGTTTGGCCACTATTACAGACGATGCAAGGTCCATATATTCTGCTGCCAAAATTCCGTTTCATCAATCAATGCTTTAA
AA sequence
>Potri.004G152100.2 pacid=42795306 polypeptide=Potri.004G152100.2.p locus=Potri.004G152100 ID=Potri.004G152100.2.v4.1 annot-version=v4.1
MENSAQRRLERVSGHLLSPIEVNNGLSQVLIKGAHGKHEEEGDPVVIGGMVLDIHATPSLPLNPRTTTPGKVHYVLGGVARNIAECMSKLGTKPYMISAL
GNDMAGKLLLEHWNSASLSTEGIMKHQDIKTPVICNIFDTEGELAAAVASVEAVEKFLTSSWIQQSKQNIFCAPVMMVDANLSLPALEASCQLAAESNTP
VWFEPVSVAKSRRIVSVAKYVTFASPNEDELIAMANALSHENMFRHIERDSNSRCSVESLFQFLKPAILVLLEKGIKIVAVTLGADGVFLCSRGPNVVRF
SLDRTKKYGVSGQLYDKVVSSCPSSRFSGALQIERSSHLFSVHFPALPASVVRLTGAGDCLVGGTLASLCSGLDIMQSIAVGIAAAKSAVEGEANVPSEF
SLATITDDARSIYSAAKIPFHQSML

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G49350 pfkB-like carbohydrate kinase ... Potri.004G152100
[exp]
0 1
AT1G49350 pfkB-like carbohydrate kinase ... Potri.004G151600
[exp]
1.00 0.8774
AT3G26580 Tetratricopeptide repeat (TPR)... Potri.013G090000
[exp]
12.56 0.8737
AT1G11340 S-locus lectin protein kinase ... Potri.011G035800
[exp]
12.96 0.8660
AT3G16510 Calcium-dependent lipid-bindin... Potri.001G070400
[exp]
15.87 0.8719
AT1G11340 S-locus lectin protein kinase ... Potri.011G036400
[exp]
25.09 0.8419
AT1G69040 ACR4 ACT domain repeat 4 (.1.2) Potri.012G102200
[exp]
25.45 0.8594
AT3G62550 Adenine nucleotide alpha hydro... Potri.002G196700
[exp]
26.40 0.8235
AT1G11340 S-locus lectin protein kinase ... Potri.011G036532
[exp]
28.63 0.8022
AT1G67910 unknown protein Potri.018G079200
[exp]
32.95 0.8648
AT4G27290 S-locus lectin protein kinase ... Potri.011G035913
[exp]
34.89 0.8186

Potri.004G152100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.