Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18830 626 / 0 ATPMT5, AtPLT5 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) AT2G16120 588 / 0 ATPMT1, AtPLT1 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 1, polyol/monosaccharide transporter 1 (.1) AT2G16130 585 / 0 ATPMT2, AtPLT2 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 2, polyol/monosaccharide transporter 2 (.1) AT4G36670 498 / 2e-173 AtPMT6, AtPLT6 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) AT2G18480 470 / 6e-162 AtPLT3 Major facilitator superfamily protein (.1) AT2G20780 409 / 8e-138 AtPLT4 Major facilitator superfamily protein (.1) AT2G43330 191 / 2e-54 ATINT1 inositol transporter 1 (.1) AT5G16150 188 / 5e-53 PGLCT, GLT1 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) AT5G59250 171 / 1e-46 Major facilitator superfamily protein (.1) AT5G17010 167 / 9e-46 Major facilitator superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G151725 [exp] 883 / 0 AT3G18830 640 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.009G113600 [exp] 851 / 0 AT3G18830 717 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.007G027900 [exp] 503 / 4e-175 AT4G36670 638 / 0.0 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) Potri.006G158700 [exp] 426 / 3e-145 AT3G18830 477 / 6e-165 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.013G135200 [exp] 414 / 8e-140 AT2G20780 747 / 0.0 Major facilitator superfamily protein (.1) Potri.004G039100 [exp] 396 / 9e-133 AT2G20780 647 / 0.0 Major facilitator superfamily protein (.1) Potri.004G097800 [exp] 194 / 5e-55 AT5G16150 656 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Potri.007G126800 [exp] 192 / 8e-55 AT2G43330 710 / 0.0 inositol transporter 1 (.1) Potri.017G032200 [exp] 184 / 6e-52 AT2G43330 743 / 0.0 inositol transporter 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040482 [exp] 726 / 0 AT3G18830 722 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10042339 [exp] 722 / 0 AT3G18830 735 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10011288 [exp] 721 / 0 AT3G18830 721 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10011287 [exp] 681 / 0 AT3G18830 692 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10035255 [exp] 647 / 0 AT3G18830 656 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10034623 [exp] 645 / 0 AT3G18830 652 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10006971 [exp] 613 / 0 AT3G18830 631 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10041731 [exp] 527 / 0 AT4G36670 664 / 0.0 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) Lus10026032 [exp] 501 / 2e-174 AT4G36670 645 / 0.0 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) Lus10014323 [exp] 502 / 2e-169 AT5G66740 650 / 0.0 Protein of unknown function (DUF620) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00083 [poplar] [flax] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Potri.004G152300.1 pacid=42793895 polypeptide=Potri.004G152300.1.p locus=Potri.004G152300 ID=Potri.004G152300.1.v4.1 annot-version=v4.1 ATGTCTGCAGGTCTAAACTCAGAAAGGGATGTCAATCCTAGCCAACCCACAACAGAGAAAACACTAGCAGATTTTGATCCTGTAAAGAAACCAAAAAGAA ACAAATTTGCTTTTGCTTGCGCAATCACAGCTTCCGTGGCTTCAATCTTACTTGGTTATGATATCGGAGTAATGAGTGGAGCCAAGGACTACATCCAAAC TGACCTTAAACTCAGTGACGTGCAAGTAGGATTACTTGTGGGAACTCTCAACTGGTACTCTCTTGTTGGCTCAGCCGCTGCTGGGGTGACCTCTGACTGG ATTGGTCGTCGATACACTATTGTGGTGGCAGGAGCCGTTTTCTTTGCTGGAGCTCTGCTCATGGGATTTTCCACAAATTATGCATTTCTCATGGTTGCTC GCTTTGTTGCTGGTATTGGTGTCGGTTTTGCCCTCATGATTGCCCCTGTTTACACCACTGAAGTTTCGCCAGCTTCTTCTCGTGGATTTCTCACCTCATT CCCAGAAGTATTCATCAATGTTGGGATCTTACTAGGATATGTATCCAATTATGCTTTCTCTAAGCTCCCAACTAACTTAGGTTGGCGAATCATGCTTGGA GTTGGAGCAATTCCTTCAGTTTTCTTAGCTTTGGTTGTTATAGGCATGCCCGAGTCTCCACGTTGGCTAGTCATGCAAGGTCGACTCGGTGATGCTAGGA AAGTTCTTGACAAAACCTCCGACACTAAAGAAGAATCTCAACAGAGATTGTCAGACATAAAAGAAGCCGCCGGAATCCCTCAAGATTGCAACGATGACGT TGTCCGTGTGCAGAAAAAGAGTCACGGCGAAGGTGTTTGGAAAGAATTATTCGTTCATCCCACACGTCCTGTTCGTCACATCCTGCTTTGTGGGATCGGT ATTCATTTCTTCCAACAAGCTTCAGGAATAGACGCGGTCGTTTTGTACAGTACCAACATCTTCGAAAAGGCCGGAATCACATCATCCAATGATAAATTAC TGGCAACTGTAGCGGTTGGATTCACCAAGACCGTTTTTATCTTAGTGGCCACATTCCTACTAGATAGGATCGGGCGACGGCCGCTGCTCTTAAGTAGTGT TGGTGGTATGGTACTATCCCTAGCAACCCTCGGATTCGGGCTGACAATAATTGATCATTCACCTGAGAAACTACCATGGGCAGTTGCATTATCAATCGCT ATGGTGTTAGCTTTTGTTGCATTCTTCTCCATAGGAATGGGACCGATACCTTGGGTTTATAGTTCAGAGATTTTCCCGTTGAGATTACGCGCTCAGGGGA CAGGTATGGGGGTGGCCATGAATAGAGTGACAAGTGGGGTAATATCTACAACTTTTATTATGCTATACAAGGCTATATCTATTGGTGGGGCCTTTTTCCT GTTCGCAGGTTTTGCAACAGTGGCTTGGGTATTCTTTTTTGCATGTTTTCCTGAGACACGAGGAAGAACCTTGGAGGACATGGAAGTGCTTTTTGGTAAT TTTATCAGCTGGAGGTCTGTTTTAAAGGATGGGAAAAAGGAGGAGGAAGTTCACGGTGGAAATGATGGTCAAATCCAGATGGGAACTAAAGCTTAA
AA sequence Show only first row Show all	>Potri.004G152300.1 pacid=42793895 polypeptide=Potri.004G152300.1.p locus=Potri.004G152300 ID=Potri.004G152300.1.v4.1 annot-version=v4.1 MSAGLNSERDVNPSQPTTEKTLADFDPVKKPKRNKFAFACAITASVASILLGYDIGVMSGAKDYIQTDLKLSDVQVGLLVGTLNWYSLVGSAAAGVTSDW IGRRYTIVVAGAVFFAGALLMGFSTNYAFLMVARFVAGIGVGFALMIAPVYTTEVSPASSRGFLTSFPEVFINVGILLGYVSNYAFSKLPTNLGWRIMLG VGAIPSVFLALVVIGMPESPRWLVMQGRLGDARKVLDKTSDTKEESQQRLSDIKEAAGIPQDCNDDVVRVQKKSHGEGVWKELFVHPTRPVRHILLCGIG IHFFQQASGIDAVVLYSTNIFEKAGITSSNDKLLATVAVGFTKTVFILVATFLLDRIGRRPLLLSSVGGMVLSLATLGFGLTIIDHSPEKLPWAVALSIA MVLAFVAFFSIGMGPIPWVYSSEIFPLRLRAQGTGMGVAMNRVTSGVISTTFIMLYKAISIGGAFFLFAGFATVAWVFFFACFPETRGRTLEDMEVLFGN FISWRSVLKDGKKEEEVHGGNDGQIQMGTKA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Potri.004G152300 [exp]	0	1
AT3G51860		CAX1-LIKE, ATHC...	cation exchanger 3 (.1)		Potri.016G115500 [exp]	1.41	0.9553	CAX3.2
AT4G31980			unknown protein		Potri.001G046000 [exp]	3.16	0.9481
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Potri.001G048900 [exp]	3.46	0.9299
AT3G19660			unknown protein		Potri.017G109900 [exp]	5.65	0.9346
AT2G19130			S-locus lectin protein kinase ...		Potri.013G121350 [exp]	6.08	0.8952
AT5G24470		APRR5	pseudo-response regulator 5 (....		Potri.002G179800 [exp]	7.74	0.9240
AT5G42270		FTSH5, VAR1	VARIEGATED 1, FtsH extracellul...		Potri.005G249200 [exp]	7.93	0.9256	Pt-FTSH2.1
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Potri.008G099100 [exp]	9.79	0.8868	Pt-ACT11.13
AT2G17270		PHT3;3	phosphate transporter 3;3 (.1)		Potri.004G207200 [exp]	10.24	0.9291
AT5G38660		APE1	acclimation of photosynthesis ...		Potri.004G102100 [exp]	10.72	0.9309

Compare expression of checked genes

Potri.004G152300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.