Plant FIBer expression Database

Potri.004G152800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G11755 258 / 1e-86 LEW1 LEAF WILTING 1, Undecaprenyl pyrophosphate synthetase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026330
[exp]
348 / 1e-121 AT1G11755 241 / 2e-79 LEAF WILTING 1, Undecaprenyl pyrophosphate synthetase family protein (.1)
Lus10042338
[exp]
219 / 5e-72 AT1G11755 162 / 6e-50 LEAF WILTING 1, Undecaprenyl pyrophosphate synthetase family protein (.1)
PFAM info
Representative CDS sequence
>Potri.004G152800.1 pacid=42793869 polypeptide=Potri.004G152800.1.p locus=Potri.004G152800 ID=Potri.004G152800.1.v4.1 annot-version=v4.1
ATGGACTTCAAAGATGAAGTGCAGAGAGTTAAATTTGGGATTAATCAGATTGGAAATTTCGGGCTTCGACTAGTTTGGCATTCTGTACATCTTCTTGTGA
GATTTTGGTATCTTGGAGTTGGTGTAGCTAATGTGATCGAGAGCTATTTGATCTCTAGTGGATTACTGAAGCGTTACAGATCTATTGATGTTGGCAAGCT
CCGGTATCTTGCGATTGTGATAGAGAGCGATGATGCTTGCCGAATTTCGAAAGTCATTCAGCTTTTGCAATGGCTACAAGCTATTGGTGTCAAACATTTA
TGCCTCTATGATACAGAAGGAGTGCTCAAGAAATCTAAGGAATCCATCTTAGCGAAGTTGAAAAATGCAACTTTATTTGAGGAAGCTGATGAAAGAGATT
CGTTACTGGACCAGAAACACATGACTCTGGAATTTGCTTCAATCTCAGATGGAAAGGAAGCAGTGGCCAAGGGTGGTAATGTACTTTTCATGAAGTACTC
GAAGGTGGCTAATTCTGGTGCAGAACAGAAAGAACAGATATTCACAGAAGCTAACATGACTGAGGCACTGCGAGCTGTAGGTTGTGGAGGGCCAGAACCT
GATCTGCTATTAGTTTATGGACCTGCAAGATGCCATCTAGGTTTCCCAGCTTGGAGAATTCGATATACCGAGATAGTACATATGGGACCCTTGAAGTCCG
TGAGATACGGTTCCCTGGTGAAGGCCATTTACAAGTTCACCATAGTGCGGCAAAAGTACGGAACATGA
AA sequence
>Potri.004G152800.1 pacid=42793869 polypeptide=Potri.004G152800.1.p locus=Potri.004G152800 ID=Potri.004G152800.1.v4.1 annot-version=v4.1
MDFKDEVQRVKFGINQIGNFGLRLVWHSVHLLVRFWYLGVGVANVIESYLISSGLLKRYRSIDVGKLRYLAIVIESDDACRISKVIQLLQWLQAIGVKHL
CLYDTEGVLKKSKESILAKLKNATLFEEADERDSLLDQKHMTLEFASISDGKEAVAKGGNVLFMKYSKVANSGAEQKEQIFTEANMTEALRAVGCGGPEP
DLLLVYGPARCHLGFPAWRIRYTEIVHMGPLKSVRYGSLVKAIYKFTIVRQKYGT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G11755 LEW1 LEAF WILTING 1, Undecaprenyl p... Potri.004G152800
[exp]
0 1
AT3G52090 NRPE11, NRPD11,... DNA-directed RNA polymerase, R... Potri.009G070900
[exp]
1.73 0.8558 RPB13.1
Potri.018G104801
[exp]
3.31 0.8742
AT2G05630 ATG8D Ubiquitin-like superfamily pro... Potri.002G228800
[exp]
4.69 0.8619
AT3G11750 FOLB1 Dihydroneopterin aldolase (.1) Potri.016G067200
[exp]
5.74 0.8214
AT5G14680 Adenine nucleotide alpha hydro... Potri.017G071700
[exp]
8.36 0.8226
AT1G29810 Transcriptional coactivator/pt... Potri.001G352800
[exp]
9.48 0.8216
AT3G48330 ATPIMT1, PIMT1 Arabidopsis thaliana protein-l... Potri.012G090300
[exp]
10.67 0.8051
AT5G40660 ATP12 protein-related (.1) Potri.001G338200
[exp]
15.09 0.8387
AT5G40380 CRK42 cysteine-rich RLK (RECEPTOR-li... Potri.012G087000
[exp]
15.74 0.8225
AT4G24900 unknown protein Potri.015G096700
[exp]
19.89 0.8212

Potri.004G152800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.