Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-CLPP6.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11750 397 / 4e-141 NCLPP6, NCLPP1, CLPP6 NUCLEAR-ENCODED CLPP 1, CLP protease proteolytic subunit 6 (.1.2) AT1G02560 170 / 2e-51 NCLPP5, NCLPP1, CLPP5 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) AT1G66670 164 / 6e-49 NCLPP3, NCLPP4, CLPP3 CLP protease proteolytic subunit 3 (.1) AT5G45390 161 / 4e-48 NCLPP3, NCLPP4, CLPP4 NUCLEAR-ENCODED CLP PROTEASE P4, CLP protease P4 (.1) AT5G23140 151 / 9e-45 NCLPP7, NCLPP2, CLPP2 nuclear-encoded CLP protease P7 (.1) AT1G12410 139 / 1e-39 EMB3146, CLP2, NCLPP2, CLPR2 NUCLEAR-ENCODED CLP PROTEASE P2, EMBRYO DEFECTIVE 3146, CLP protease proteolytic subunit 2 (.1) ATCG00670 128 / 2e-36 PCLPP, ATCG00670.1, CLPP1 CASEINOLYTIC PROTEASE P 1, plastid-encoded CLP P (.1) AT4G17040 123 / 2e-33 HON5, CLPR4 happy on norflurazon 5, CLP protease R subunit 4 (.1) AT1G09130 115 / 2e-30 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.3) AT1G49970 85 / 8e-19 SVR2, NCLPP5, CLPR1 SUPPRESSOR OF VARIEGATION 2, NUCLEAR CLPP 5, CLP protease proteolytic subunit 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G114001 [exp] 456 / 1e-164 AT1G11750 353 / 2e-123 NUCLEAR-ENCODED CLPP 1, CLP protease proteolytic subunit 6 (.1.2) Potri.014G119700 [exp] 171 / 1e-51 AT1G02560 493 / 6e-178 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) Potri.002G195200 [exp] 171 / 1e-51 AT1G02560 474 / 2e-170 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) Potri.003G103300 [exp] 170 / 2e-51 AT5G45390 383 / 9e-135 NUCLEAR-ENCODED CLP PROTEASE P4, CLP protease P4 (.1) Potri.004G092100 [exp] 166 / 2e-49 AT1G66670 441 / 2e-156 CLP protease proteolytic subunit 3 (.1) Potri.007G071700 [exp] 156 / 3e-46 AT5G23140 383 / 1e-135 nuclear-encoded CLP protease P7 (.1) Potri.005G092600 [exp] 154 / 5e-46 AT5G23140 380 / 3e-135 nuclear-encoded CLP protease P7 (.1) Potri.001G115900 [exp] 137 / 7e-39 AT1G12410 408 / 3e-145 NUCLEAR-ENCODED CLP PROTEASE P2, EMBRYO DEFECTIVE 3146, CLP protease proteolytic subunit 2 (.1) Potri.001G130601 [exp] 134 / 2e-38 AT5G45390 239 / 2e-79 NUCLEAR-ENCODED CLP PROTEASE P4, CLP protease P4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040477 [exp] 281 / 4e-95 AT1G11750 305 / 2e-104 NUCLEAR-ENCODED CLPP 1, CLP protease proteolytic subunit 6 (.1.2) Lus10011282 [exp] 279 / 4e-94 AT1G11750 300 / 2e-102 NUCLEAR-ENCODED CLPP 1, CLP protease proteolytic subunit 6 (.1.2) Lus10002422 [exp] 163 / 6e-49 AT1G02560 361 / 4e-126 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) Lus10012156 [exp] 161 / 2e-48 AT5G45390 293 / 1e-99 NUCLEAR-ENCODED CLP PROTEASE P4, CLP protease P4 (.1) Lus10007589 [exp] 161 / 4e-48 AT5G45390 293 / 2e-99 NUCLEAR-ENCODED CLP PROTEASE P4, CLP protease P4 (.1) Lus10001450 [exp] 162 / 1e-47 AT1G02560 365 / 1e-126 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) Lus10010196 [exp] 155 / 2e-46 AT5G23140 395 / 4e-141 nuclear-encoded CLP protease P7 (.1) Lus10040981 [exp] 156 / 4e-46 AT5G23140 350 / 1e-122 nuclear-encoded CLP protease P7 (.1) Lus10040982 [exp] 155 / 6e-46 AT5G23140 338 / 5e-118 nuclear-encoded CLP protease P7 (.1) Lus10013434 [exp] 155 / 7e-46 AT5G23140 347 / 3e-121 nuclear-encoded CLP protease P7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0127 [poplar] [flax] ClpP_crotonase PF00574 [poplar] [flax] CLP_protease Clp protease
Representative CDS sequence Show only first row Show all	>Potri.004G152900.1 pacid=42796037 polypeptide=Potri.004G152900.1.p locus=Potri.004G152900 ID=Potri.004G152900.1.v4.1 annot-version=v4.1 ATGGTAGGAGCATCAGCTATTTCTGCCCCTGCTACCAGCTTCTCTATCTTTCCTCGCGCCAAATCCCCTTCTCTTTCTTTATTCTCTCACAGAAGAAACT CGGTGGTTTCTGCCTTGCCTAGACCCTATAGTGATTCTTCAACTAGATTATCCCTAAGGATCGACGAGAAGGGTTTTCGTGATGCTAAACAAAGTTATGT CACAGTTGAAGCAAAGGGGGGAAATCCGCCCATTATGCCAGCAGTGATGACTCCAGGAGGACCTATGGATTTGTCATCTGTGTTATTTAGGAATCGCATA ATTTTCATTGGGCAGCCAATAAATTCACAGGTGGCTCAACGAGTTATATCACAGCTCGTGACTCTAGCAACTATTGATGAGAAAACAGATATTCTGTTGT ATCTGAATTGTCCTGGTGGAAGCACTTACTCTGTTCTGGCAATTTATGATTGCATGTCTTGGATAAAGCCTAAAGTTGGCACTGTATGTTTTGGAGTGGC TGCAAGCCAAGGAGCGCTTCTTCTTTCTGGAGGAGAGAAGGGAATGCGGTATGCAATGCCTAATGCACGTATTATGATTCATCAACCGCAGGGTGGCTGT GGGGGTCATGTGGAGGATGTGAGACGCCAAGTAAATGAAGCAGTTCAAGCTCGTCATAAAATTGACCAAATGTATGCTACATTCACTGGTCAACCCCTTG AGAAAGTACAGCAATACACTGAGAGAGATCGTTTCTTATCCACTTCAGAGGCTATGGAGTTTGGGCTCATCGATGGCATCCTGGAAACAGAATATTAA
AA sequence Show only first row Show all	>Potri.004G152900.1 pacid=42796037 polypeptide=Potri.004G152900.1.p locus=Potri.004G152900 ID=Potri.004G152900.1.v4.1 annot-version=v4.1 MVGASAISAPATSFSIFPRAKSPSLSLFSHRRNSVVSALPRPYSDSSTRLSLRIDEKGFRDAKQSYVTVEAKGGNPPIMPAVMTPGGPMDLSSVLFRNRI IFIGQPINSQVAQRVISQLVTLATIDEKTDILLYLNCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQGALLLSGGEKGMRYAMPNARIMIHQPQGGC GGHVEDVRRQVNEAVQARHKIDQMYATFTGQPLEKVQQYTERDRFLSTSEAMEFGLIDGILETEY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G11750		NCLPP6, NCLPP1,...	NUCLEAR-ENCODED CLPP 1, CLP pr...		Potri.004G152900 [exp]	0	1	Pt-CLPP6.2
AT3G52150			RNA-binding (RRM/RBD/RNP motif...		Potri.009G065900 [exp]	4.35	0.9801
AT3G08740			elongation factor P (EF-P) fam...		Potri.016G136600 [exp]	6.24	0.9769
AT3G13120			Ribosomal protein S10p/S20e fa...		Potri.011G092800 [exp]	6.92	0.9777
AT1G65260		VIPP1, PTAC4	VESICLE-INDUCING PROTEIN IN PL...		Potri.006G123600 [exp]	8.94	0.9758
AT5G13510		EMB3136	EMBRYO DEFECTIVE 3136, Ribosom...		Potri.008G045800 [exp]	12.24	0.9737
AT4G19100		PAM68	photosynthesis affected mutant...		Potri.001G132001 [exp]	12.44	0.9750
AT2G17972			unknown protein		Potri.005G115000 [exp]	12.96	0.9701
AT1G74970		TWN3, RPS9	ribosomal protein S9 (.1)		Potri.014G039600 [exp]	13.74	0.9737	RPS9.1
AT4G09040			RNA-binding (RRM/RBD/RNP motif...		Potri.005G161000 [exp]	14.07	0.9702
AT5G21920		ATYLMG2	YGGT family protein (.1.2)		Potri.006G220400 [exp]	15.49	0.9728

Compare expression of checked genes

Potri.004G152900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.