Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49320 240 / 2e-78 ATUSPL1 unknown seed protein like 1 (.1) AT5G25610 169 / 2e-49 ATRD22, RD22 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) AT1G70370 96 / 9e-22 PG2 polygalacturonase 2 (.1.2) AT1G60390 89 / 1e-19 PG1 polygalacturonase 1 (.1) AT1G23760 86 / 2e-18 PG3, JP630 POLYGALACTURONASE 3, BURP domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G114300 [exp] 528 / 0 AT1G49320 240 / 2e-78 unknown seed protein like 1 (.1) Potri.009G114600 [exp] 301 / 5e-102 AT1G49320 220 / 5e-71 unknown seed protein like 1 (.1) Potri.006G243700 [exp] 174 / 1e-51 AT5G25610 319 / 4e-107 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.006G243600 [exp] 174 / 4e-51 AT5G25610 299 / 2e-98 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.T012700 [exp] 171 / 9e-51 AT5G25610 214 / 2e-66 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.T012500 [exp] 169 / 6e-50 AT5G25610 208 / 4e-64 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.018G036700 [exp] 167 / 1e-48 AT5G25610 307 / 2e-101 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.004G136900 [exp] 160 / 7e-47 AT5G25610 211 / 2e-65 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.004G136000 [exp] 159 / 2e-46 AT5G25610 211 / 3e-65 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040475 [exp] 266 / 8e-89 AT1G49320 191 / 7e-60 unknown seed protein like 1 (.1) Lus10042335 [exp] 265 / 4e-88 AT1G49320 184 / 6e-57 unknown seed protein like 1 (.1) Lus10026333 [exp] 253 / 4e-84 AT1G49320 187 / 9e-59 unknown seed protein like 1 (.1) Lus10007011 [exp] 250 / 4e-82 AT1G49320 213 / 7e-68 unknown seed protein like 1 (.1) Lus10006665 [exp] 250 / 2e-81 AT1G49320 177 / 3e-53 unknown seed protein like 1 (.1) Lus10006667 [exp] 239 / 2e-77 AT1G49320 196 / 4e-61 unknown seed protein like 1 (.1) Lus10032324 [exp] 222 / 4e-71 AT1G49320 184 / 4e-57 unknown seed protein like 1 (.1) Lus10011280 [exp] 202 / 7e-64 AT1G49320 167 / 9e-51 unknown seed protein like 1 (.1) Lus10042332 [exp] 178 / 4e-55 AT1G49320 115 / 7e-38 unknown seed protein like 1 (.1) Lus10003263 [exp] 167 / 3e-49 AT5G25610 266 / 7e-87 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03181 [poplar] [flax] BURP BURP domain
Representative CDS sequence Show only first row Show all	>Potri.004G153100.1 pacid=42796291 polypeptide=Potri.004G153100.1.p locus=Potri.004G153100 ID=Potri.004G153100.1.v4.1 annot-version=v4.1 ATGGGTGTTGATGTTTTGTCTTGGAGACTTATCCTCTGTTCTCTACTTGTTTTACTGTTTGCTAAAGACTGTAGTGCAAGAAAGATGACTCACACAAGAT GGAGAGAAGTGCCGGATGATGATACAAACGGTCTGCAACACAATCGAGAACCTGATTTGCAACAGCTTTCAAAGGATGATCATCTTCTAACCAGGCACAG TAGGGATGGTGATCATCGAAACCATGAACATGCTCATCTATCATCACATATGAATCATATGGACCCTTCAGACAAGATTTTCTTCACCATAGAAGATCTG CAAGTTGGAAAAACACTTCCACTTTACTTCTACTATAGAGACCCTTCAACTTCTCCTCATCTGATATCTAGAGAAGAAGCCAATTCAATTCCTTTCTCTT TAGCAAAATTACCTTATCTTCTTGAATTTTTCTCTTTGTCCAAAGAATCTCCTCAAGCCAAAGCCATGGAATATACACTAACACAATGTGAACTTGAACT CATGGAAGGTGAGACCAAGTTCTGTGCTACTTCCTTGGAATCCATGCTTGATTTTGCACAGGCCACTTTTGGATCGGAAACCCAAGTAAAAGCCTTAACT ACCAATCATCTTAGAAAGCCAGTTGCACCTATACAAAACTACACCATTGTGGAGGAGCCTAGAGAGATCTTGGTACCAAAAGTGATAGGATGTCATACCA TGCCTTACCCTTACGTAGTTTATTATTGCCATAGCCAAGAAGGTGGGAACAGGTTATTTGAGATTTCACTTGGTGGTGAGAATGGAGATAGAGTCCAAGC TATTGGTGTTTGCCACATGGACACCTCTCGATGGGATCCTGACAACCCATCATTTCGTGTGCTGAAAATAAAGCCTGGAACTGCCCCTGTATGCCATATT TTCCCAGCAGATAACATAGTATGGGTGCCTTTGCTTTCATAA
AA sequence Show only first row Show all	>Potri.004G153100.1 pacid=42796291 polypeptide=Potri.004G153100.1.p locus=Potri.004G153100 ID=Potri.004G153100.1.v4.1 annot-version=v4.1 MGVDVLSWRLILCSLLVLLFAKDCSARKMTHTRWREVPDDDTNGLQHNREPDLQQLSKDDHLLTRHSRDGDHRNHEHAHLSSHMNHMDPSDKIFFTIEDL QVGKTLPLYFYYRDPSTSPHLISREEANSIPFSLAKLPYLLEFFSLSKESPQAKAMEYTLTQCELELMEGETKFCATSLESMLDFAQATFGSETQVKALT TNHLRKPVAPIQNYTIVEEPREILVPKVIGCHTMPYPYVVYYCHSQEGGNRLFEISLGGENGDRVQAIGVCHMDTSRWDPDNPSFRVLKIKPGTAPVCHI FPADNIVWVPLLS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G49320		ATUSPL1	unknown seed protein like 1 (....		Potri.004G153100 [exp]	0	1
AT1G49310			unknown protein		Potri.004G153200 [exp]	1.00	0.8984
AT2G38920			SPX (SYG1/Pho81/XPR1) domain-c...		Potri.016G064600 [exp]	1.73	0.8071
AT2G37900			Major facilitator superfamily ...		Potri.006G092000 [exp]	3.16	0.8292
AT1G59740			Major facilitator superfamily ...		Potri.003G000800 [exp]	3.46	0.7970
AT1G49000			unknown protein		Potri.012G059500 [exp]	6.70	0.8059
AT1G07175			unknown protein		Potri.001G277600 [exp]	6.92	0.7811
AT4G17970		ATALMT12, ALMT1...	"aluminum-activated, malate tr...		Potri.005G208500 [exp]	7.48	0.8061
AT3G51630		ATWNK5, ZIK1, W...	with no lysine (K) kinase 5 (....		Potri.016G134600 [exp]	7.48	0.7917
AT4G06744			Leucine-rich repeat (LRR) fami...		Potri.009G098700 [exp]	10.81	0.7768
AT3G11760			unknown protein		Potri.010G244100 [exp]	11.40	0.7897

Compare expression of checked genes

Potri.004G153100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.