Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34450 1513 / 0 coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative (.1) AT2G16200 95 / 2e-23 structural molecules (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G115100 [exp] 1667 / 0 AT4G34450 1511 / 0.0 coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040465 [exp] 1537 / 0 AT4G34450 1526 / 0.0 coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative (.1) Lus10026336 [exp] 1530 / 0 AT4G34450 1528 / 0.0 coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative (.1) Lus10023580 [exp] 1483 / 0 AT4G34450 1462 / 0.0 coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative (.1) Lus10042326 [exp] 1389 / 0 AT4G34450 1416 / 0.0 coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01602 [poplar] [flax] Adaptin_N Adaptin N terminal region CL0159 [poplar] [flax] E-set PF08752 [poplar] [flax] COP-gamma_platf Coatomer gamma subunit appendage platform subdomain CL0545 [poplar] [flax] APCOP-app_sub PF16381 [poplar] [flax] Coatomer_g_Cpla Coatomer subunit gamma-1 C-terminal appendage platform
Representative CDS sequence Show only first row Show all	>Potri.004G153500.1 pacid=42796456 polypeptide=Potri.004G153500.1.p locus=Potri.004G153500 ID=Potri.004G153500.1.v4.1 annot-version=v4.1 ATGGCACAGCCTCTCGTGAAAAAAGACGATGATCGCGACGATGAAGCGGAGTACTCTCCTTTTTTGGGTATTGAGAAGGGAGCTGTTCTTCAGGAAGCTA GGGTTTTTAATGACCCTCAACTTGATCCGAGAAGATGCTCACAGGTTATTACAAAGCTTCTTTATCTATTGAACCAGGGAGATTCCTTCACTAAGGTTGA AGCCACAGAAGTTTTCTTTTCTGTGACAAAGCTTTTCCAGTCAAAAGATTTAGGTCTGAGGAGAATGGTTTATTTGATTATAAAGGAATTATCACCATCA GCAGATGAGGTTATTATTGTGACAAGCTCCCTAATGAAGGACATGAATAGCAAGACTGATATGTATCGAGCAAATGCCATTCGTGTGCTTTGTCGGATAA CAGATGGAACCCTTCTTACCCAGATTGAGCGATATCTGAAACAAGCAATCGTTGACAAGAATCCAGTGGTTGCTAGTGCAGCCTTGGTCAGTGGGATTCA TTTACTCCAGACGAACCCAGAGATTGTGAAAAGGTGGAGTAATGAGGTTCAAGAAGCTGTACAGTCAAGGGCTGCCCTAGTACAATTTCATGCACTGGCT TTGCTCCAACAGATACGACAGAATGATCGACTTGCTGTTAGCAAGTTGGTTACCAGTTTGACTAGGGGAACTGTTCGCTCACCACTGGCTCAATGCCTTT TGATACGCTATACTAGTCAGGTTATTCGTGAGTCTAGCACACAAACAGGGGACCGTCCTTTCTATGATTTTCTGGAGAGTTGTCTGCGCCATAAGGCAGA AATGGTGATATTTGAGGCTGCCAGAGCAATTACAGAGCTCAGTGGTGTGACAAGCCGTGAACTGACTCCAGCCATTACTGTTCTCCAGCTCTTCTTGAGC TCTTCCAAGCCTGTGCTGAGATTTGCAGCTGTCCGCACTTTGAACAAGGTGGCCATGACCCATCCGATGGCTGTGACTAACTGCAACATCGATATGGAGA GTTTAATTTCAGACCAGAACAGAAGCATTGCCACTCTTGCAATCACCACTCTACTGAAGACTGGAAATGAATCAAGTGTGGATCGCTTGATGAAGCAGAT AACAAATTTCATGTCAGATATTGCTGATGAGTTCAAAATTGTTGTTGTGGAAGCCATAAGGTCACTGTGTTTGAAGTTTCCCTTGAAGTACAGATCATTG ATGAACTTTTTAAGCAACATTCTCAGGGAGGAAGGAGGATTTGAGTACAAAAAGGCTATTGTAGATTCAATTGTGATCCTCATCAGAGATATCCCTGAAG CAAAAGAAAGCGGTTTGCTTCATTTGTGTGAATTTATTGAAGATTGTGAATTTACCTATCTATCCACACAGATACTCCATTTTCTGGGGATTGAAGGCCC GAAGACCACTGATCCGAGCAAATATATTCGCTATATCTACAACCGTGTGCATCTTGAGAATGCTACTGTTCGGGCTGCTGCTGTGAGCACTCTGGCTAAA TTTGGTGCCATGGTTGATGCATTGAAGCCACGTATTTTTGTCCTGTTGAGACGTTGTATCTTTGACAGTGATGATGAGGTTCGTGATAGGGCAACACTTT ATCTCAACACACTTGGAGGTGATGGTGAAGTGGTTGAAACTGATAAAGAAGTTAAGACTTTCCTCTTTGGAGACCTGGATATTCCCCTAGTGAATTTGGA GACAAGTTTGAAAAATTATGAACCTTCTGAGGAGCCTTTTGATATTCATTCTGTTCCAAAAGAAGTTAAGTCTCAGCCACTTGTTGAGAAGAAAGCCCCA GGCAAAAAGCCAGCTGGTCTTGGAGCTCCTCCAGCTGGTCCTCCATCTACTGTTGATGCTTACGAAAGGCTTCTTTCGTCTATTCCAGAATTCTCAAACT TTGGGAAGCTTTTCAAGTCCTCAGCTCCTGTGGAGCTCACAGAAGCAGAAACAGAATATGCAGTTAATGTTGTTAAGCACATATTTGATAGGCATGTGGT GTTCCAGTACAACTGCACCAACACAATTCCTGAGCAACTACTGGAAAATGTCTCCGTTATAGTGGATGCTTCAGAAGCAGATGACTTTGCAGAAGTAGCA TCCAAGCCTTTACGATCTCTTCCTTATGATACACCTGGACAAACCTTTGTGGCATTTGAGAAGCCTGAGGGTATTACAACAGTTGGAAAGTTTACAAACA TGTTGAGGTTCATTGTTAAAGAGGTTGATCCAAGTACTGGTGAGGCAGAGGAAGATGGTGTTGAGGATGAATACCAACTAGAGGACCTTGAAGTTGTTGC AGCAGATTTCATGATGAAGGTTGGAGTCTCCAATTTCAGGAATGCCTGGGAAAGCATGGGAGATGATTTTGAGCGTGTGGATGAATATGGCCTTGGCCCA AGGGAGAGCTTGGCCGAAGCTGTTAGTGCTGTCATCAACCTTCTTGGCATGCAGCCTTGTGAGGGAACAGAGGTTGTCGCAACCAATTCAAGGTCACACA CGTGTCTACTCTCTGGTGTATCCTTAGGCAATGTGAAGGTTCTTGTACGGTTGCAGTTTGGAATTGAGGGTTCAAGGGATGTTGCGATGAAACTGTCTGT TAGATCCGAGGATGAAGCCATTGGTGATGCCATTCATGAGATTGTATCATGCAGCTAA
AA sequence Show only first row Show all	>Potri.004G153500.1 pacid=42796456 polypeptide=Potri.004G153500.1.p locus=Potri.004G153500 ID=Potri.004G153500.1.v4.1 annot-version=v4.1 MAQPLVKKDDDRDDEAEYSPFLGIEKGAVLQEARVFNDPQLDPRRCSQVITKLLYLLNQGDSFTKVEATEVFFSVTKLFQSKDLGLRRMVYLIIKELSPS ADEVIIVTSSLMKDMNSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTNPEIVKRWSNEVQEAVQSRAALVQFHALA LLQQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTSQVIRESSTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELSGVTSRELTPAITVLQLFLS SSKPVLRFAAVRTLNKVAMTHPMAVTNCNIDMESLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSL MNFLSNILREEGGFEYKKAIVDSIVILIRDIPEAKESGLLHLCEFIEDCEFTYLSTQILHFLGIEGPKTTDPSKYIRYIYNRVHLENATVRAAAVSTLAK FGAMVDALKPRIFVLLRRCIFDSDDEVRDRATLYLNTLGGDGEVVETDKEVKTFLFGDLDIPLVNLETSLKNYEPSEEPFDIHSVPKEVKSQPLVEKKAP GKKPAGLGAPPAGPPSTVDAYERLLSSIPEFSNFGKLFKSSAPVELTEAETEYAVNVVKHIFDRHVVFQYNCTNTIPEQLLENVSVIVDASEADDFAEVA SKPLRSLPYDTPGQTFVAFEKPEGITTVGKFTNMLRFIVKEVDPSTGEAEEDGVEDEYQLEDLEVVAADFMMKVGVSNFRNAWESMGDDFERVDEYGLGP RESLAEAVSAVINLLGMQPCEGTEVVATNSRSHTCLLSGVSLGNVKVLVRLQFGIEGSRDVAMKLSVRSEDEAIGDAIHEIVSCS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G34450			coatomer gamma-2 subunit, puta...		Potri.004G153500 [exp]	0	1
AT4G24840			unknown protein		Potri.015G094000 [exp]	3.74	0.9452
AT5G10840			Endomembrane protein 70 protei...		Potri.006G264500 [exp]	4.69	0.9433
AT5G51430		EYE	EMBRYO YELLOW, conserved oligo...		Potri.003G109100 [exp]	9.16	0.9220
AT4G31480			Coatomer, beta subunit (.1.2)		Potri.018G007400 [exp]	9.79	0.9392
AT1G16780		AtVHP2;2, AVPL1	Inorganic H pyrophosphatase fa...		Potri.010G254200 [exp]	10.24	0.9244
AT5G11980			conserved oligomeric Golgi com...		Potri.006G225500 [exp]	11.61	0.9351
AT5G08580			Calcium-binding EF hand family...		Potri.005G087600 [exp]	11.61	0.9092
AT1G62020			Coatomer, alpha subunit (.1)		Potri.012G074800 [exp]	14.03	0.8668
AT3G53520		ATUXS1, UXS1	UDP-glucuronic acid decarboxyl...		Potri.016G080500 [exp]	14.07	0.9167
AT2G40730		CTEXP	cytoplasmic tRNA export protei...		Potri.013G090500 [exp]	15.42	0.9272

Compare expression of checked genes

Potri.004G153500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.