Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34440 550 / 0 AtPERK5 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) AT3G18810 516 / 2e-175 AtPERK6 proline-rich extensin-like receptor kinase 6, Protein kinase superfamily protein (.1) AT2G18470 506 / 2e-172 AtPERK4, PERK4 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) AT1G49270 495 / 2e-167 AtPERK7 proline-rich extensin-like receptor kinase 7, Protein kinase superfamily protein (.1) AT3G24550 479 / 2e-161 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT1G52290 459 / 7e-156 AtPERK15 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) AT3G24540 439 / 3e-148 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT5G38560 412 / 3e-135 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) AT4G32710 398 / 1e-133 PERK14 proline-rich extensin-like receptor kinase 14, Protein kinase superfamily protein (.1) AT1G70460 403 / 2e-131 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G115200 [exp] 682 / 0 AT4G34440 575 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Potri.005G124400 [exp] 524 / 6e-180 AT2G18470 597 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Potri.007G027000 [exp] 519 / 2e-177 AT2G18470 599 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Potri.018G081300 [exp] 516 / 5e-176 AT3G24550 629 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.003G053301 [exp] 454 / 4e-153 AT1G52290 531 / 0.0 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) Potri.001G183000 [exp] 448 / 8e-151 AT3G24550 560 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.006G242800 [exp] 432 / 1e-142 AT3G24550 449 / 6e-149 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.008G189700 [exp] 416 / 5e-136 AT1G23540 642 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) Potri.008G111600 [exp] 412 / 2e-134 AT1G68690 622 / 0.0 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011098 [exp] 515 / 8e-176 AT3G24550 700 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10023645 [exp] 506 / 1e-171 AT3G24550 691 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10043219 [exp] 503 / 4e-171 AT3G24550 688 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10026335 [exp] 489 / 3e-168 AT4G34440 542 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Lus10042327 [exp] 492 / 8e-167 AT4G34440 560 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Lus10024020 [exp] 483 / 2e-164 AT2G18470 591 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Lus10014318 [exp] 473 / 2e-163 AT2G18470 552 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Lus10041734 [exp] 475 / 6e-161 AT2G18470 596 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Lus10040467 [exp] 463 / 2e-156 AT4G34440 501 / 7e-172 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Lus10026027 [exp] 410 / 9e-137 AT2G18470 420 / 5e-141 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.004G153600.3 pacid=42795483 polypeptide=Potri.004G153600.3.p locus=Potri.004G153600 ID=Potri.004G153600.3.v4.1 annot-version=v4.1 ATGTCTTCCCCCGCGCCTGAAGAATCTCCACTTTCTCCACCACCATCATCTGCACCACCTCCGTCGTTAAAAGAGCCACCGCCACCACCATTGGAGTCAT CGCCACCTCCATCCACATCCCCGCCCCCGGTAGAGGTCTCTCCATCACCACCACCACCGCCAACAGATTCCACACCCCCCTCTGATCAAAGCTCGCCCTC ACCACCACCACCAGAAAACTCGGATTCTTCACCACCACCACCTTCCTCTTCTAAGGAAAATAACTCACCACCTCCTCCCCCAACAACAAAAGATAATGGT AGTAATATTTGGTCGCCTCCACCACCTCCATCATCATCCAAGTCTCGCAACTCGCCACCTCCACCACGATCTCTAGGACAATCAGGGAATTCGTCACCGA ACAATACCCCTGCAACATCTTCAGGCAATGGGGATGAAGCTAACCTTGTACCAATTATAGCAGGAACCGTGGTTGGAGTAGGGTTATTGTTGTTGCTTGC CCTGCTTGTATTTTTATGTACATGCAGATCGAAAAAGAAGAGATCGCCACAATATAATTACTACAAAGATCACTCCCCTGCACCCAAAGCCGCAGGTGGT CCTTATTACAACGCAACACCTCTTCAACAACCTGTTAGTAATGGGCACAACGAAAGCAAGCTCACAGAGCAAGTTGTAAATCTTCCTCCACCTCCTGGTG GAGGACATGGAGCTTGGTCACCCGCACTACCACCACCACCACCACCTCAAGTTGCAATTATGTCAAGTAGTGAAATGAGTTCCAATTACTCCGGCTCACA CAGTTCGTCAGGATTGCCTCCATCACACCCGTCCTTGACTCTTGGGTTCACCAAGAGCAGCTTCAGCTACGGTGAATTAGCAGCAGCAACTGCAGGATTT TCTCAAGCTAATCTACTAGGCCAGGGAGGTTTTGGTTATGTGCATAAAGGGGTGTTGCCTAATGGCAAGGAAATTGCAGTTAAGAGTCTCAAAACTGGTA GTGGACAAGGAGATCGAGAATTTCAGGCTGAGGTTGAGATTATTAGCCGCGTCCATCATCGCCACCTCGTGTCCCTTGTTGGTTATTGCATTGAAGGAGG TCAGAGATTGTTGGTTTATGAGTTCGTCCCCAATTCCACCCTTGAATTTCACCTTCATGGTAAGGGTCATCCGCCCATGGGCTGGCCTACTAGGCTCAAA ATTGCCCTGGGATCGGCCAGAGGACTTGCATACTTGCATGAAGACTGCCACCCACGCATTATCCACAGGGACATTAAAGCAGCAAATATTCTGCTTGACT ACAGTTTCGAAGCTATGGTGGCAGATTTTGGTTTGGCTAAGCTATCTTCAGACAACTATACTCATGTATCTACTCGAATAATGGGAACATTCGGGTACTT GGCTCCAGAGTATGCTTCGAGCGGCAAGCTTACCGATAAATCTGATGTTTTCTCCTTCGGTGTCATGCTATTGGAACTAATAACTGGACGTCGCCCTGTG GATCTCTCTGGGGACATGGATGACAGCTTGGTAGACTGGGCTAGACCCTTCTGTGCAAAAGCACTAGAAGATGGAAACTACGATGAGTTGGTTGATCCAG CTTTGGAGGGCAATTACGATCTCCAGGAGATGGCATGCATGGTAGCATGCGCTGGTGCATCGGTTAGTCATTCAGCAAAGAGGAGGCCGAAAATGAGCCG GATTGTACGAGCACTTGAAGGTGAAGTCTCCTTGGAAGAAGGGAGGAAAGCTGGCCTAATCTTCAGCTCCGCTTCCAGTTCTGATCATGACCAAAGCTCA TACAGTACAGATATGCGGAGGTTTAGGAGGACGGCATTAGACAGCAACGACTATGTAAGCAGCGAATTTGGTCACACGAGCGAATATGGGCTGAATCCTT CCTCTTCCAGCAGTGAAGAAATGAGTCAAATGACCAAGAGTCGGACAGGGAGTCAGAGACGTAGCCCTTGA
AA sequence Show only first row Show all	>Potri.004G153600.3 pacid=42795483 polypeptide=Potri.004G153600.3.p locus=Potri.004G153600 ID=Potri.004G153600.3.v4.1 annot-version=v4.1 MSSPAPEESPLSPPPSSAPPPSLKEPPPPPLESSPPPSTSPPPVEVSPSPPPPPTDSTPPSDQSSPSPPPPENSDSSPPPPSSSKENNSPPPPPTTKDNG SNIWSPPPPPSSSKSRNSPPPPRSLGQSGNSSPNNTPATSSGNGDEANLVPIIAGTVVGVGLLLLLALLVFLCTCRSKKKRSPQYNYYKDHSPAPKAAGG PYYNATPLQQPVSNGHNESKLTEQVVNLPPPPGGGHGAWSPALPPPPPPQVAIMSSSEMSSNYSGSHSSSGLPPSHPSLTLGFTKSSFSYGELAAATAGF SQANLLGQGGFGYVHKGVLPNGKEIAVKSLKTGSGQGDREFQAEVEIISRVHHRHLVSLVGYCIEGGQRLLVYEFVPNSTLEFHLHGKGHPPMGWPTRLK IALGSARGLAYLHEDCHPRIIHRDIKAANILLDYSFEAMVADFGLAKLSSDNYTHVSTRIMGTFGYLAPEYASSGKLTDKSDVFSFGVMLLELITGRRPV DLSGDMDDSLVDWARPFCAKALEDGNYDELVDPALEGNYDLQEMACMVACAGASVSHSAKRRPKMSRIVRALEGEVSLEEGRKAGLIFSSASSSDHDQSS YSTDMRRFRRTALDSNDYVSSEFGHTSEYGLNPSSSSSEEMSQMTKSRTGSQRRSP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G34440		AtPERK5	proline-rich extensin-like rec...		Potri.004G153600 [exp]	0	1
AT5G61820			unknown protein		Potri.012G110600 [exp]	1.00	0.7748
AT1G74160			unknown protein		Potri.012G061900 [exp]	3.87	0.7551
AT1G55200			Protein kinase protein with ad...		Potri.002G130300 [exp]	4.00	0.7576
AT5G65290			LMBR1-like membrane protein (....		Potri.005G072100 [exp]	8.00	0.7319
AT4G32640			Sec23/Sec24 protein transport ...		Potri.002G082900 [exp]	8.83	0.7622
AT5G17680			disease resistance protein (TI...		Potri.019G002500 [exp]	15.81	0.7301
					Potri.019G023500 [exp]	16.24	0.7287
					Potri.005G135700 [exp]	17.14	0.7421
AT2G44150		SDG7, ASHH3	SET DOMAIN-CONTAINING PROTEIN ...		Potri.017G000400 [exp]	19.07	0.7167
AT3G15605			nucleic acid binding (.1.2.3.4...		Potri.001G174700 [exp]	22.22	0.7068

Compare expression of checked genes

Potri.004G153600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.