Plant FIBer expression Database

CAP1.1 (Potri.004G153900) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol CAP1.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G34490 659 / 0 ATCAP1 cyclase associated protein 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G115500
[exp]
767 / 0 AT4G34490 665 / 0.0 cyclase associated protein 1 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023575
[exp]
680 / 0 AT4G34490 647 / 0.0 cyclase associated protein 1 (.1)
Lus10026338
[exp]
679 / 0 AT4G34490 658 / 0.0 cyclase associated protein 1 (.1)
Lus10042324
[exp]
679 / 0 AT4G34490 658 / 0.0 cyclase associated protein 1 (.1)
Lus10040460
[exp]
666 / 0 AT4G34490 642 / 0.0 cyclase associated protein 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF01213 CAP_N Adenylate cyclase associated (CAP) N terminal
CL0391 CAP_C-like PF08603 CAP_C Adenylate cyclase associated (CAP) C terminal
Representative CDS sequence
>Potri.004G153900.2 pacid=42795991 polypeptide=Potri.004G153900.2.p locus=Potri.004G153900 ID=Potri.004G153900.2.v4.1 annot-version=v4.1
ATGGAGGAGAGGCTAATGGCTAGGCTAGAATCGGCGGTGGCGCGATTAGAAGCACTTTCGTTGAGAGGGGGAAGTGTGGCGGGGAGTGGCGGGGATGATG
CTTCAGCGACGGATCCGTCGATTGTAGCGTTCGAAGATTTCATGGGGGCATACCTCGGTAGGGTTTCGAGCGCTGGAGAGAAGATTGGAGGACAAGTTTT
AGCAGTCACGAAGATTCTAGAACAAGCTCTTAACATGCAAAAGGAACTTCTCATTAAGATCAAGCAAACACAGAAGCCCGATCTTGCAGGATTGGCTGAA
TTTCTCAAGCCATTAAATGAAGTGATCATGAAAGCAAATTCAATGACAGAGGGAAGGAGATCTGATTTCTTTAACCACCTGAAGGCAGCTGCTGACAGTT
CCACAGCTTTAGCCTGGATTGCCTACACTGGAAAAGATTGTGGTATGAGCATGCCTATTGCGCACGTGGAAGAAAGTTGGCAAATGGCTGAATTTTACAA
TAATAAGATTCTTGTAGAGTACAAAAGCAAAGACCCAAATCATGTTGAATGGGCCAAGGCTTTGAAGGAGTTATATTTACCAGGTTTGAGGGATTATGTA
AAGAGTCATTATCCCTTGGGTCCAGTGTGGAGTGCAACTGCCAAAGCAAAAGCTGCTGCACCAAGCGCTCCCGCTCCTCCACCTCCTCCACCAGCTTCTC
TCTTCACTTCTGAATCTTCTTCTCCTTCATCATCAAAGCCAAAAGTAGGGATGGCTGCTGTTTTCCAAGAAATCAGTTCTGGGAAGCCTGTGACTTCAGG
TCTTAGAAAGGTCACAGACAATATGAAGACAAAGAACCGTGCTGATAGAACTGGTGTTGTTGGTGCTAGTGAAAAAGAAAGCCGTACTAGTTCACCCTCT
TTCTCCAAGGCAGGGCCTCCAAAACTGGAACTTCAAATGGGTCGTAAGTGGGTTGTTGAGAATCAAATTGGAAGAAAGAATTTAGTAATTGATGACTGTG
ATGCAAAACAGTCTGTGTATATTTTTGGATGCAAAGATTCAGTTTTGCAGGTTCAAGGGAAAGTTAACAATATAACAATCGACAAATGCACTAAGATGGG
GGTTGTATTCACGGATGTGGTGGCTGCTTGTGAGATTGTGAATTGCAGTGGTGTTGAGGTGCAATGCCAGGGTTCTGCTCCAACAATTTCAGTGGACAAC
ACGGGAGGCTGTCAATTATATTTAAGCAAAGGTTCTTTGGGGGCATCTATTACTACTGCTAAATCTAGCGAGATCAATATATTGGTACCTGGTGCAGAAC
CTGATGGAGATTTGGTGGAGCATGCCTTGCCACAACAGTTCATTCATACGTTCAAGGATGGCCAGTTTGAAACTACTCCTGTCTCCCACTCTGGAGGGTA
A
AA sequence
>Potri.004G153900.2 pacid=42795991 polypeptide=Potri.004G153900.2.p locus=Potri.004G153900 ID=Potri.004G153900.2.v4.1 annot-version=v4.1
MEERLMARLESAVARLEALSLRGGSVAGSGGDDASATDPSIVAFEDFMGAYLGRVSSAGEKIGGQVLAVTKILEQALNMQKELLIKIKQTQKPDLAGLAE
FLKPLNEVIMKANSMTEGRRSDFFNHLKAAADSSTALAWIAYTGKDCGMSMPIAHVEESWQMAEFYNNKILVEYKSKDPNHVEWAKALKELYLPGLRDYV
KSHYPLGPVWSATAKAKAAAPSAPAPPPPPPASLFTSESSSPSSSKPKVGMAAVFQEISSGKPVTSGLRKVTDNMKTKNRADRTGVVGASEKESRTSSPS
FSKAGPPKLELQMGRKWVVENQIGRKNLVIDDCDAKQSVYIFGCKDSVLQVQGKVNNITIDKCTKMGVVFTDVVAACEIVNCSGVEVQCQGSAPTISVDN
TGGCQLYLSKGSLGASITTAKSSEINILVPGAEPDGDLVEHALPQQFIHTFKDGQFETTPVSHSGG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G34490 ATCAP1 cyclase associated protein 1 (... Potri.004G153900
[exp]
0 1 CAP1.1
AT5G45750 AtRABA1c RAB GTPase homolog A1C (.1) Potri.011G070300
[exp]
3.60 0.8851
AT5G01090 Concanavalin A-like lectin fam... Potri.010G194700
[exp]
4.00 0.8409
AT5G63220 unknown protein Potri.008G044100
[exp]
4.47 0.8534
AT3G53850 Uncharacterised protein family... Potri.010G198700
[exp]
8.48 0.8394
AT3G48970 Heavy metal transport/detoxifi... Potri.015G144300
[exp]
12.00 0.8257
AT4G00710 BSK3 BR-signaling kinase 3 (.1) Potri.014G082400
[exp]
12.12 0.7564
AT1G71900 Protein of unknown function (D... Potri.013G114100
[exp]
13.63 0.8473
AT3G07190 B-cell receptor-associated pro... Potri.002G245300
[exp]
14.49 0.8113
AT1G11890 ATSEC22, SEC22 SECRETION 22, Synaptobrevin fa... Potri.001G165600
[exp]
17.43 0.8518 Pt-SEC22.1
AT1G56050 GTP-binding protein-related (.... Potri.011G143700
[exp]
18.84 0.7894

Potri.004G153900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.