Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34500 564 / 0 Protein kinase superfamily protein (.1) AT1G01540 475 / 3e-165 Protein kinase superfamily protein (.1.2) AT4G01330 462 / 7e-160 Protein kinase superfamily protein (.1.2) AT4G02630 443 / 2e-152 Protein kinase superfamily protein (.1) AT3G59110 411 / 9e-140 Protein kinase superfamily protein (.1) AT1G56720 404 / 5e-137 Protein kinase superfamily protein (.1.2.3) AT1G09440 400 / 5e-136 Protein kinase superfamily protein (.1) AT2G42960 396 / 5e-134 Protein kinase superfamily protein (.1) AT5G18500 394 / 3e-133 Protein kinase superfamily protein (.1.2) AT3G17420 385 / 3e-130 GPK1 glyoxysomal protein kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G115600 [exp] 731 / 0 AT4G34500 553 / 0.0 Protein kinase superfamily protein (.1) Potri.014G088800 [exp] 478 / 3e-166 AT1G01540 687 / 0.0 Protein kinase superfamily protein (.1.2) Potri.014G026100 [exp] 473 / 8e-164 AT4G02630 608 / 0.0 Protein kinase superfamily protein (.1) Potri.002G059000 [exp] 416 / 1e-141 AT3G59110 704 / 0.0 Protein kinase superfamily protein (.1) Potri.005G203300 [exp] 410 / 2e-139 AT3G59110 686 / 0.0 Protein kinase superfamily protein (.1) Potri.005G139500 [exp] 407 / 8e-139 AT4G02630 477 / 2e-166 Protein kinase superfamily protein (.1) Potri.013G003700 [exp] 408 / 1e-138 AT1G56720 677 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.005G003300 [exp] 407 / 6e-138 AT1G56720 712 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.010G001600 [exp] 395 / 7e-134 AT5G18500 635 / 0.0 Protein kinase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042324 [exp] 595 / 0 AT4G34490 658 / 0.0 cyclase associated protein 1 (.1) Lus10023574 [exp] 526 / 0 AT4G34500 547 / 0.0 Protein kinase superfamily protein (.1) Lus10040459 [exp] 518 / 0 AT4G34500 549 / 0.0 Protein kinase superfamily protein (.1) Lus10026338 [exp] 476 / 1e-161 AT4G34490 658 / 0.0 cyclase associated protein 1 (.1) Lus10018722 [exp] 467 / 2e-161 AT4G02630 642 / 0.0 Protein kinase superfamily protein (.1) Lus10024813 [exp] 466 / 6e-161 AT4G02630 632 / 0.0 Protein kinase superfamily protein (.1) Lus10036386 [exp] 461 / 1e-159 AT1G01540 748 / 0.0 Protein kinase superfamily protein (.1.2) Lus10007919 [exp] 461 / 2e-159 AT1G01540 751 / 0.0 Protein kinase superfamily protein (.1.2) Lus10041593 [exp] 452 / 2e-155 AT4G01330 568 / 0.0 Protein kinase superfamily protein (.1.2) Lus10012664 [exp] 444 / 5e-155 AT4G02630 511 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.004G154000.3 pacid=42796483 polypeptide=Potri.004G154000.3.p locus=Potri.004G154000 ID=Potri.004G154000.3.v4.1 annot-version=v4.1 ATGTCGGATTTCGACACTGAAACAAAAACCAACACCACCACCACCAACTACAATCTCCCTCACAAACTAACCTCAACAACGCCATTTTTGAATCTTAAAC TCTATGTTTTAATTGCAATTCTCTTAATATGTCTCCTCTTAGTTTCATTTTTAATATTTCTCTGTGTTCACTTACGCCGCGCCTCTAGAAAACGCAACAA GATGCGAGTGAAACACAGTTCGGGATCTATCCCTTTAGTGTCTAAAGAAATTGTGGAGATTAAAGATTTGGATTTTAAGGAAAATAAAGAGAGAGACGAG GGCAATGTAGTGAATGTGGGTTTTGTAAAGATGGAGAATGGTGGTGGTGGTGATGTGGAGATGGGAAAGAAGAGTGGAGAGAGTAGCAGTAGTATTAGTG ACGACATTTCGTCGGTGGAGGAAAATATAGGGTGGGGTCGATGGTATAGTTTGAAAGAGCTCGAGATTGCGACACGTGGATTTTCTGAAGAAAACGTGAT CGGTGAAGGAGGGTATGGTGTTGTCTACAGAGGAGTTTTGCAAGATGGGTCTGTCGTTGCTGTCAAGAATTTACTTAATAATAAGGGTCAGGCGGAGAAG GAGTTTAAGGTAGAAGTTGAAGCAATTGGAAAAGTAAGACATAAGAACTTGGTGCGCCTAATTGGGTATTGCGCAGATGGTTCTAGCAGGATGCTTGTTT ATGAATATGTTGACAACGGAAATTTGGAGCAATGGTTACATGGTGATGTAGGTCCTGTTAGTCCTATGACCTGGGATATCCGAATGAATATTGCAATTGG GACAGCAAAAGGGCTGGCCTATTTACATGAAGGTTTAGAACCTAAAGTTGTTCATCGAGATGTAAAATCCAGTAACATACTTCTGGATAGAAAATGGAAC CCCAAGGTCTCAGACTTTGGATTGGCCAAACTCTTGGGTTCTGAAGCAAGCTATGTGACCACACGTGTTATGGGGACATTTGGATATGTATCACCTGATT ATGCAAGTACAGGCATGCTTAATGAGGGGAGTGATGTATACAGTTTTGGTGTTCTTCTTATGGAGATGATTACTGGAAGGAGTCCCATTGATTACTCCAG ACCAGCCGGAGAGATGAACTTGGTTGACTGGTTCAAAGGAATGGTAGCAAGCCGTCGTGGAGAGGAGCTTGTAGATCCCCTCATTGAAGTTCAACCTGCT CCAAGGTCTTTGAAACGAACATTGCTGGTTTGCCTCCGATGTATAGATTTGGATGCCTGTAAGCGACCAAAAATGGGGCAAATTGTTCATATGCTTGAGG CAGATGACTTTCCTTTCCGTGCGGAACTTCGAACAGTTCGCGAGAAAGATCCTCCTCCTTCCCATGCTGTTGTTATCTCCAACAAACTTCAACATCCAAC CAAGCATGCTGGCAGTGGTGCTGATGTTGAGATATCAAGGCGAAGATGA
AA sequence Show only first row Show all	>Potri.004G154000.3 pacid=42796483 polypeptide=Potri.004G154000.3.p locus=Potri.004G154000 ID=Potri.004G154000.3.v4.1 annot-version=v4.1 MSDFDTETKTNTTTTNYNLPHKLTSTTPFLNLKLYVLIAILLICLLLVSFLIFLCVHLRRASRKRNKMRVKHSSGSIPLVSKEIVEIKDLDFKENKERDE GNVVNVGFVKMENGGGGDVEMGKKSGESSSSISDDISSVEENIGWGRWYSLKELEIATRGFSEENVIGEGGYGVVYRGVLQDGSVVAVKNLLNNKGQAEK EFKVEVEAIGKVRHKNLVRLIGYCADGSSRMLVYEYVDNGNLEQWLHGDVGPVSPMTWDIRMNIAIGTAKGLAYLHEGLEPKVVHRDVKSSNILLDRKWN PKVSDFGLAKLLGSEASYVTTRVMGTFGYVSPDYASTGMLNEGSDVYSFGVLLMEMITGRSPIDYSRPAGEMNLVDWFKGMVASRRGEELVDPLIEVQPA PRSLKRTLLVCLRCIDLDACKRPKMGQIVHMLEADDFPFRAELRTVREKDPPPSHAVVISNKLQHPTKHAGSGADVEISRRR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G34500			Protein kinase superfamily pro...		Potri.004G154000 [exp]	0	1
AT2G37090		IRX9	IRREGULAR XYLEM 9, Nucleotide-...		Potri.016G086400 [exp]	7.00	0.9030
AT5G06970			Protein of unknown function (D...		Potri.001G030100 [exp]	9.16	0.8951
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Potri.010G187600 [exp]	10.24	0.8904
AT1G16860			Ubiquitin-specific protease fa...		Potri.010G252400 [exp]	12.80	0.8979
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Potri.001G042900 [exp]	13.74	0.8725
AT3G56230			BTB/POZ domain-containing prot...		Potri.013G083800 [exp]	15.19	0.8966
AT5G66310			ATP binding microtubule motor ...		Potri.007G014800 [exp]	16.43	0.8919
AT2G39770		VTC1, SOZ1, GMP...	VITAMIN C DEFECTIVE 1, SENSITI...		Potri.008G006700 [exp]	18.46	0.8638	EMB101.3
AT5G50420			O-fucosyltransferase family pr...		Potri.003G073500 [exp]	20.12	0.8878	FUT13.1
AT5G22400			Rho GTPase activating protein ...		Potri.004G201600 [exp]	20.19	0.8699

Compare expression of checked genes

Potri.004G154000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.