Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63850 97 / 5e-21 BTB/POZ domain-containing protein (.1) AT5G60050 81 / 4e-16 BTB/POZ domain-containing protein (.1) AT3G05675 70 / 2e-12 BTB/POZ domain-containing protein (.1.2) AT3G50780 69 / 2e-12 unknown protein AT2G13690 66 / 2e-11 PRLI-interacting factor, putative (.1) AT3G19920 46 / 4e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G100900 [exp] 103 / 2e-23 AT1G63850 696 / 0.0 BTB/POZ domain-containing protein (.1) Potri.005G129700 [exp] 92 / 2e-19 AT3G50780 623 / 0.0 unknown protein Potri.003G131000 [exp] 88 / 3e-18 AT1G63850 653 / 0.0 BTB/POZ domain-containing protein (.1) Potri.001G233900 [exp] 82 / 2e-16 AT5G60050 533 / 0.0 BTB/POZ domain-containing protein (.1) Potri.006G202900 [exp] 81 / 4e-16 AT3G05675 532 / 0.0 BTB/POZ domain-containing protein (.1.2) Potri.007G032800 [exp] 81 / 5e-16 AT3G50780 654 / 0.0 unknown protein Potri.007G109300 [exp] 70 / 1e-12 AT2G13690 518 / 4e-180 PRLI-interacting factor, putative (.1) Potri.001G086100 [exp] 69 / 3e-12 AT3G05675 348 / 9e-117 BTB/POZ domain-containing protein (.1.2) Potri.005G058700 [exp] 67 / 9e-12 AT2G13690 526 / 0.0 PRLI-interacting factor, putative (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040458 [exp] 591 / 0 AT1G63850 84 / 5e-17 BTB/POZ domain-containing protein (.1) Lus10023573 [exp] 587 / 0 AT1G63850 87 / 8e-18 BTB/POZ domain-containing protein (.1) Lus10024658 [exp] 119 / 3e-28 AT1G63850 672 / 0.0 BTB/POZ domain-containing protein (.1) Lus10017511 [exp] 118 / 6e-28 AT1G63850 706 / 0.0 BTB/POZ domain-containing protein (.1) Lus10028772 [exp] 96 / 1e-20 AT1G63850 707 / 0.0 BTB/POZ domain-containing protein (.1) Lus10022484 [exp] 87 / 5e-18 AT3G50780 602 / 0.0 unknown protein Lus10021269 [exp] 79 / 2e-15 AT3G05675 439 / 4e-152 BTB/POZ domain-containing protein (.1.2) Lus10013580 [exp] 79 / 2e-15 AT3G05675 438 / 9e-152 BTB/POZ domain-containing protein (.1.2) Lus10023336 [exp] 77 / 7e-15 AT5G60050 532 / 0.0 BTB/POZ domain-containing protein (.1) Lus10038475 [exp] 76 / 2e-14 AT5G60050 518 / 0.0 BTB/POZ domain-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G154600.1 pacid=42794363 polypeptide=Potri.004G154600.1.p locus=Potri.004G154600 ID=Potri.004G154600.1.v4.1 annot-version=v4.1 ATGATCCCATCCACCTCCAAAAAACGGCCACGCGTGCCATACAACCGCCATTCCACCGTCTCCACAACCGCCAGCCTCCGCTCAACCGCCTCCAGATCCA CTAGCCTCTCCTCCACCGCCGCCTTAATCGATTCATTTCCTGACCAAACCATCTCCGAAACCTCCAAAAAACTCCGCCGAACCTCCTCCCACCCGCTCCT CTCCACCACCCCCTCCTCCACCACCACCACCCGGTTCAACGATGTTAACACCGCTGACGTGATCCTCCGCCTCTTCCTGGACCCCACTTCCCCCATCATT AACTTATCGGATTCAGTTTATTCAATTGACAATAATAACCAATCCAATGTCCAGATCTACCTCCATTCTCCCATCCTCCGCCGGTCTAAGTATTTCTCCG CCCTTTTATCTGACAGATGGCAGCTCTCCAAGGAAAATCCCGATTCTGCTGAAAATAAAATCGACCCGTACTTGATTCCGTTGAAATTAGGCGTCGCTCC TGGATCGATCGAAGTCCATCTAAGCGTTTTAAAATTGCTGTATACAAACGATTTCAATAATGTGATTAACTCTGCTGCGGCGGCTCTAGATATTTTGCCG GTTGCGTTAAAGTTGTTGTTTGATGAGTGTGCGGATTATTGCGTTAAGTATCTTGAGGCTGTGCCGTGGAGTGAAGAGGAAGAGAAGCGCGTGATTAATT TAATTCCATATTTACGCGAGGAGGAATCTGAAGAGCTATTAGCTAGGGTTTCTCCGGCGAAATATGATTCGTGTGAGGAAATGCTTCATGGTTTGATATT GGCTGCGATTCATAGTAGTTCGAACATGGCATTTGTGAAAGCGTTTGTGGCTAAGTTGTTGAGGGATTTTTCATCGAGGGAGTCCGCGAGGAGGGTTTTG GAGATGGCGTTTGAGACGAGTTTGAAGATTGTGAAGGAATCGCTTGAGGAGTATTCGAGTCCGAATTTTAGAGGGGATCATAATGAGACGGAAGCGATAC AGAGGTTGAATTTGCATACAGCGATGACTAATGGGAAGCATTTGTTGTGGTTAGTGGAGAGGATGATTGAGCTGAGAGTGGCGGATAGTGCGGTGAAGGA GTGGAGTGAGCAAGATTCTTTTACGGCTGATTTGCAGAGGGCTTTTCGGGATGATGCGTGGAGGAATATTGTTCCGGGCTTTCCTGCTGTTTTGCTTCGT TGCACTTGTAAGCTTGCTAATGCTGTTGCTTCTGGGACCATTTTGGCCGCTAGACAGGTGAGGATGAAGCTTGTAAAGGATTGGCTTCCTGTTCTGATTG TATGCAAAGACAGTGCACTTTCTTCTATGTTACCAAATCATAAATCACTGTACCTGGAGCTGGAAGAGACATTTCTAAGAATTATTTCCACACTTCCCAT GTCAGATGCTCAAGTGTTGTTGCAGCAGTGTCTCAGCTTCTCAACTCGAAATTTTGAAGATTGCCCCCACTTAGTCACCGCATTCAACACTTGGTTCCGC CGTGCAACAAATCAACCACAAGGGTGA
AA sequence Show only first row Show all	>Potri.004G154600.1 pacid=42794363 polypeptide=Potri.004G154600.1.p locus=Potri.004G154600 ID=Potri.004G154600.1.v4.1 annot-version=v4.1 MIPSTSKKRPRVPYNRHSTVSTTASLRSTASRSTSLSSTAALIDSFPDQTISETSKKLRRTSSHPLLSTTPSSTTTTRFNDVNTADVILRLFLDPTSPII NLSDSVYSIDNNNQSNVQIYLHSPILRRSKYFSALLSDRWQLSKENPDSAENKIDPYLIPLKLGVAPGSIEVHLSVLKLLYTNDFNNVINSAAAALDILP VALKLLFDECADYCVKYLEAVPWSEEEEKRVINLIPYLREEESEELLARVSPAKYDSCEEMLHGLILAAIHSSSNMAFVKAFVAKLLRDFSSRESARRVL EMAFETSLKIVKESLEEYSSPNFRGDHNETEAIQRLNLHTAMTNGKHLLWLVERMIELRVADSAVKEWSEQDSFTADLQRAFRDDAWRNIVPGFPAVLLR CTCKLANAVASGTILAARQVRMKLVKDWLPVLIVCKDSALSSMLPNHKSLYLELEETFLRIISTLPMSDAQVLLQQCLSFSTRNFEDCPHLVTAFNTWFR RATNQPQG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G63850			BTB/POZ domain-containing prot...		Potri.004G154600 [exp]	0	1
AT5G14540			Protein of unknown function (D...		Potri.012G083200 [exp]	1.00	0.9082
AT3G23880			F-box and associated interacti...		Potri.008G199800 [exp]	2.44	0.9014
AT5G65200		ATPUB38	ARABIDOPSIS THALIANA PLANT U-B...		Potri.015G071200 [exp]	8.30	0.8601
AT5G24810			ABC1 family protein (.1.2)		Potri.018G003400 [exp]	8.71	0.8886
AT3G01990		ACR6	ACT domain repeat 6 (.1)		Potri.001G327000 [exp]	10.39	0.8836
AT5G62640		AtELF5, ELF5	EARLY FLOWERING 5, proline-ric...		Potri.015G090200 [exp]	10.53	0.8904	ELF5.2
AT2G39950			unknown protein		Potri.010G192800 [exp]	11.83	0.8548
AT3G50910			unknown protein		Potri.005G120600 [exp]	13.41	0.8809
AT2G39950			unknown protein		Potri.008G064500 [exp]	15.29	0.8431
AT3G57990			unknown protein		Potri.016G046900 [exp]	15.87	0.8810

Compare expression of checked genes

Potri.004G154600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.