Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79010 335 / 3e-118 Alpha-helical ferredoxin (.1) AT1G16700 331 / 2e-116 ATMLO14 Alpha-helical ferredoxin (.1) ATCG01090 68 / 5e-14 ATCG01090.1, NDHI NADPH dehydrogenases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G116000 [exp] 355 / 4e-126 AT1G79010 368 / 3e-131 Alpha-helical ferredoxin (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023571 [exp] 336 / 2e-118 AT1G79010 396 / 2e-142 Alpha-helical ferredoxin (.1) Lus10040456 [exp] 335 / 4e-118 AT1G79010 396 / 3e-142 Alpha-helical ferredoxin (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0344 [poplar] [flax] 4Fe-4S PF12838 [poplar] [flax] Fer4_7 4Fe-4S dicluster domain
Representative CDS sequence Show only first row Show all	>Potri.004G154900.4 pacid=42795578 polypeptide=Potri.004G154900.4.p locus=Potri.004G154900 ID=Potri.004G154900.4.v4.1 annot-version=v4.1 ATGGCTGCGATATTAGCTCGCAAGTCTCTTCATACTCTTCGCGCTCGTCAGATTGCTGTATCAGGACAAGCATTGCAAGGTTCAAACCAATATGCACTGA AATCTAGTGCCCACTTATATTCCACCCAAAAAGAAGATGAAGAAAGAGAGGAGCTTGCAAAGGAGATCTCAAAGGACTGGAGTTCTGTATTTGAGCGAAG CATAAACACACTGTTTCTTACTGAAATGGTTCGCGGTTTGTCGTTGACTCTCAAGTACTTCTTTGAGAAAAAAGTTACCATCAATTATCCATTTGAGAAA GGTCCTTTGAGCTCTCATTTTCGTGGTGAGCATGCACTCCGACGATATCATACTGGGGAGGAACGTTGTATTGCATGCAAACTCTGTGAAGCTATTTGTC CTGCACAGGCAATCACCATCGAGGCTGAGGAGCGAGAAGATGGAAGCCGCAGGACTACTAGGTATGACATTGATATGACAAAATGTATCTATTGTGGATT TTGCCAAGAGGCATGCCCTGTTGATGCCATTGTTGAAGGACCAAACTTCGAATTTACAACAGAGACTCACGAGGAGCTCTTGTACGACAAAGAAAAGCTA CTTGATAATGGAGATCGTTGGGAAACTGAGATTGCAGAGAACCTCAGATCTGAGAGCCTTTATCGTTAA
AA sequence Show only first row Show all	>Potri.004G154900.4 pacid=42795578 polypeptide=Potri.004G154900.4.p locus=Potri.004G154900 ID=Potri.004G154900.4.v4.1 annot-version=v4.1 MAAILARKSLHTLRARQIAVSGQALQGSNQYALKSSAHLYSTQKEDEEREELAKEISKDWSSVFERSINTLFLTEMVRGLSLTLKYFFEKKVTINYPFEK GPLSSHFRGEHALRRYHTGEERCIACKLCEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFTTETHEELLYDKEKL LDNGDRWETEIAENLRSESLYR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G79010			Alpha-helical ferredoxin (.1)		Potri.004G154900 [exp]	0	1
AT4G22080		RHS14	root hair specific 14 (.1)		Potri.004G007300 [exp]	7.74	0.6568
AT5G47670	CCAAT	NF-YB6, L1L	"nuclear factor Y, subunit B6"...		Potri.006G005000 [exp]	9.48	0.6568
AT3G02100			UDP-Glycosyltransferase superf...		Potri.010G084900 [exp]	13.19	0.6374
AT5G26330			Cupredoxin superfamily protein...		Potri.006G259000 [exp]	14.42	0.5912
AT1G43730			RNA-directed DNA polymerase (r...		Potri.004G000150 [exp]	15.81	0.5814
AT5G13620			unknown protein		Potri.008G045000 [exp]	22.44	0.5654
AT4G33550			Bifunctional inhibitor/lipid-t...		Potri.009G048800 [exp]	23.87	0.5556
AT2G27940			RING/U-box superfamily protein...		Potri.010G245801 [exp]	25.09	0.6082
AT3G30387			Protein of unknown function (D...		Potri.017G039125 [exp]	26.15	0.5393
AT2G19320			unknown protein		Potri.006G073300 [exp]	26.94	0.5191

Compare expression of checked genes

Potri.004G154900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.