Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39280 781 / 0 phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G116100 [exp] 915 / 0 AT4G39280 759 / 0.0 phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014563 [exp] 825 / 0 AT4G39280 820 / 0.0 phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative (.1.2) Lus10032123 [exp] 807 / 0 AT4G39280 807 / 0.0 phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0040 [poplar] [flax] tRNA_synt_II PF01409 [poplar] [flax] tRNA-synt_2d tRNA synthetases class II core domain (F)
Representative CDS sequence Show only first row Show all	>Potri.004G155000.1 pacid=42794804 polypeptide=Potri.004G155000.1.p locus=Potri.004G155000 ID=Potri.004G155000.1.v4.1 annot-version=v4.1 ATGGCAGAGGAAGCGATTTTAGGTTACTTAGAGAATCACGAAGAAATCTCCGATTCTGGCCAGTTCGCTACTGAAATTGGACTCGATCACAACGACGTTG TTAATGTCATTAAAAGCCTCCACGGTTTCCGCTACATTGAGGCCCAGGATATTAAGAGAGAAACATTGGTGCTCACTGAAGAGGGTAGAAAATATGCTGA AAAAGGATCACCTGAAGTTCAACTCTTCTTGGCTGTACCAGAGGAGGGTAGCATTTCGAAAGAAGAATTGCAGAAACTGCTAGATCCTGCAGTCTTCAAA ATAGGGTGTTCTCAGGCTGCAAAGAATAAATGGGTGCAAATGGGAAATCAAATATCTAGGAAGGTTCAACATGTTGAAGACAGAGTGAAGGATCTTCTTT TACGGATACAAGATGGGCAGGAACCTGGCAAAGATGATAACAACTCTCTCAAAGCAAGAAAGCTTACTGCTCTGCAAACCTGGAAGGGCTACTCAGTTAA AAGAGGTCCTGATTATGCTCCAACAAGAAGGAGAACTGCAACTGATTTGACTCGAGAACATCTGCTGGGGGGTGATTGGAGGAATATAGAGTTCAAAGAG TACAACTTCAGTGCCAAAGGTCCACCACCTGAAAGTGGCCATCTTCACCCGCTCAACAAGGTGAAAGAACGAATCAAAAACATCTTCCGTCTAATGAACT TTGAGGAAATGCCAACAAATAAATATGTTGAGAGCAGCTTCTGGAATTTTGATGCACTGTTTCAGCCACAACAACATCCTGCCCGCGATTCACATGATAC CTTCTTTCTTAAAGCTCCTGAAACAACAAAGCAACTGCCTGAAGATTATGTTGAGTTGGTGAAGCGTGTTCATGAGTCTGGTGGCTATGGGTCAAGGGGA TATGGATATGAGTGGAAAAGAGAGGAAGCAAACAAAAATCTTTTGCGAACTCATACAACTGCAATTTCTTCTCGGATGCTTTATGCGCTAGCACAGCATG CAAAACAGCAGTCGTTTACCCCCAAAAAGTACTTCTCCATAGATCGAGTTTTCAGAAATGAAGCAGTTGATCGAACTCATTTAGCAGAATTCCACCAGAT AGAAGGTCTGGTGTGTGATCGAGGGCTTACACTAGGTCACTTGATTGGAGTGCTGCAGGACTTCTTTTCGCGTTTAGGCATGGACAAGCTGAAATTCAAG CCTGCTTACAATCCATATACCGAGCCTAGCATGGAGATTTTCAGTTATCACGAAGGCCTCAAGAAATGGGTGGAGATTGGAAATTCTGGCATGTTCAGGC CTGAAATGTTGCGTCCTATGGGATTCTCGGAAGATGTCAATGTTATTGCCTGGGGCCTTTCGCTTGAAAGACCAACCATGATATTATATGGGATCAATAA TATCAGAGATCTTTTTGGACACAAGGTGGATCTTGGGCTCATCAAGAAAAACCCTCTATGCCTTATTGGAATTAGGTAG
AA sequence Show only first row Show all	>Potri.004G155000.1 pacid=42794804 polypeptide=Potri.004G155000.1.p locus=Potri.004G155000 ID=Potri.004G155000.1.v4.1 annot-version=v4.1 MAEEAILGYLENHEEISDSGQFATEIGLDHNDVVNVIKSLHGFRYIEAQDIKRETLVLTEEGRKYAEKGSPEVQLFLAVPEEGSISKEELQKLLDPAVFK IGCSQAAKNKWVQMGNQISRKVQHVEDRVKDLLLRIQDGQEPGKDDNNSLKARKLTALQTWKGYSVKRGPDYAPTRRRTATDLTREHLLGGDWRNIEFKE YNFSAKGPPPESGHLHPLNKVKERIKNIFRLMNFEEMPTNKYVESSFWNFDALFQPQQHPARDSHDTFFLKAPETTKQLPEDYVELVKRVHESGGYGSRG YGYEWKREEANKNLLRTHTTAISSRMLYALAQHAKQQSFTPKKYFSIDRVFRNEAVDRTHLAEFHQIEGLVCDRGLTLGHLIGVLQDFFSRLGMDKLKFK PAYNPYTEPSMEIFSYHEGLKKWVEIGNSGMFRPEMLRPMGFSEDVNVIAWGLSLERPTMILYGINNIRDLFGHKVDLGLIKKNPLCLIGIR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G39280			phenylalanyl-tRNA synthetase, ...		Potri.004G155000 [exp]	0	1
AT2G39800		ATP5CS, P5CS1	delta1-pyrroline-5-carboxylate...		Potri.010G198400 [exp]	3.74	0.6622	Pt-P5CS.1
AT4G31180			Class II aminoacyl-tRNA and bi...		Potri.006G085400 [exp]	4.00	0.7277
AT2G33840			Tyrosyl-tRNA synthetase, class...		Potri.010G248900 [exp]	4.47	0.7412
AT1G73720		SMU1	SUPPRESSORS OF MEC-8 AND UNC-5...		Potri.011G156900 [exp]	7.48	0.6820
AT4G20980			Eukaryotic translation initiat...		Potri.004G044500 [exp]	8.12	0.7377
AT5G05920		DHS, EDA22	embryo sac development arrest ...		Potri.003G186900 [exp]	9.32	0.7364
AT3G02870		VTC4	Inositol monophosphatase famil...		Potri.016G011000 [exp]	10.72	0.6444
AT4G13780			methionine--tRNA ligase, putat...		Potri.017G057700 [exp]	11.22	0.6857
AT5G56130		THO3, AtTEX1	Transducin/WD40 repeat-like su...		Potri.001G470900 [exp]	12.24	0.6861
AT1G26340		B5 #6, B5#6, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Potri.010G156900 [exp]	22.24	0.6795	B5.2

Compare expression of checked genes

Potri.004G155000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.