Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16250 921 / 0 Leucine-rich repeat protein kinase family protein (.1) AT4G39270 804 / 0 Leucine-rich repeat protein kinase family protein (.1.2) AT1G17750 221 / 2e-59 AtPEPR2 PEP1 receptor 2 (.1) AT1G17230 207 / 3e-55 Leucine-rich receptor-like protein kinase family protein (.1) AT1G34110 205 / 2e-54 Leucine-rich receptor-like protein kinase family protein (.1) AT1G28440 204 / 2e-54 HSL1 HAESA-like 1 (.1) AT5G63930 200 / 8e-53 Leucine-rich repeat protein kinase family protein (.1) AT4G08850 192 / 4e-50 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT5G49660 190 / 1e-49 XIP1 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G35710 190 / 2e-49 Protein kinase family protein with leucine-rich repeat domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G116300 [exp] 1339 / 0 AT2G16250 886 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.002G260100 [exp] 803 / 0 AT2G16250 711 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.014G196600 [exp] 520 / 6e-171 AT2G16250 741 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.002G258400 [exp] 213 / 9e-57 AT1G35710 681 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.014G195100 [exp] 209 / 1e-55 AT1G35710 681 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.008G140500 [exp] 208 / 3e-55 AT2G01950 1535 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Potri.019G025500 [exp] 206 / 1e-54 AT5G63930 1320 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.002G258200 [exp] 204 / 5e-54 AT4G08850 674 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.010G101100 [exp] 202 / 1e-53 AT2G01950 1510 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040455 [exp] 972 / 0 AT2G16250 914 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10023570 [exp] 972 / 0 AT2G16250 920 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10010823 [exp] 738 / 0 AT2G16250 717 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10020936 [exp] 213 / 1e-57 AT4G08850 793 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10006028 [exp] 209 / 1e-55 AT5G25930 1116 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10020935 [exp] 209 / 1e-55 AT4G08850 1011 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10009394 [exp] 188 / 6e-49 AT3G47570 642 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032954 [exp] 186 / 4e-48 AT5G56040 1399 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10012193 [exp] 177 / 1e-45 AT2G41820 1232 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10027221 [exp] 176 / 5e-45 AT5G61480 1263 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.004G155100.1 pacid=42795153 polypeptide=Potri.004G155100.1.p locus=Potri.004G155100 ID=Potri.004G155100.1.v4.1 annot-version=v4.1 ATGGTGGATCAAAAGATTGTATTAGCACTAAAGTTTTTGCTTTTGGTGCTGTTTTTTGAGTCTACATTTGAGCAACAACAACAAGAGAGGCTTAATTCAC CCATAGAGAGAGCAGCTTTACTTGAACTAAGATCTTCTTTGGGGTTAAGAAGCAAGGACTGGCCAAGAAAGGCAGACCCTTGTTCAGTTTGGAATGGCAT CAAATGTGAGAATGGTAGTGTCAGTGAAATTAACATTTCAGGGTTTAGAAGGACTAGACTTGGTTCTCAAAACCCACAATTTAGCGTTGATTCTCTTGTT AATTTAACAAGACTTAAATCTTTTAATGCTTCTGGTTTTTATCTTCCTGGTTCAATTCCTGATTGGTTTGGTCAAAGGCTTGTTTCCCTTCAAGTTCTTG ATCTTTCTTCTTGCTTGATAAGTAATGCCATTCCAGAGAGTTTGGGGAATTTGACCAGTTTAACTGGTCTTTATTTGCATGATAATAACTTCACGGGTAT GATTCCGTCAAGTTTGGGACTGTTGGTGGGGCTTTCAGTACTTGATCTTTCTGCAAACAAGTTTACTGGATCTATTCCTGTGTCATTTGGTTCGCTTCAG AATTTGACAAGACTTGATATTTCTAAGAATTTCTTATTCGGTTCAATTCCACTTGGCATTGGGATGCTTTCGAAGCTCCAGTATTTGAATCTTTCGAGCA ACAACTTGTCGTCTTCGATACCTCCTCAGCTCGGTGATCTTAGTAACTTGGCTGACTTTGATCTGAGCTTTAATTCGCTGTCTGGGTCATTGCCTGCTGA ATTGAGAGGCTTGAGGAATTTGCAGAGAATGCTGATTGGGAACAATTTGCTTGGTGGATTTTTGCCAGTGAATTTATTTCCTGTTCCAAGTCAGTTGCAG ACTGTAGTTTTGAAGCGCAATGGTTTTAGTGGTTCGGTCCCTGATTTGCTGTGGTCAATACCTCAATTGCGCTTGCTTGATATCTCCGGCAACAATTTCA CTGGTATTCTGCCAAATGGTAGCTTGAATGCCAATGCCAGTTCTGCAGAGTTGAATATATCTGAGAATTTGTTTTATGGAGGTCTTACACCTACGCTAAG AAGGTTCCTTGTTGTTGACCTGTCTGGCAATTATTTCGAAGGCACAGTTCCAGATTATGTGAGTGACAATGCTTCTCTTGTTAGCAATTGTCTCCAAAAC TCGTCAAATCAGAGGAGTTTGCTTGATTGTACATCTTTCTATACTGAAAAGGGCCTGACTTTTGATAATTTCGGACTCCCGAACTCCACGCAACCTCCTG CTGGGGAAAACACAGGGAAGAACAACAAAAAGGTCATTATATGGGCAAGTGTTTTGGGAGGAGTTGGGCTCATTCTACTTTTGGTGATATTGCTGGTACT GCTACTCTTTTGCATCCGTAAGAGGGGCACTATGACCCAAGGAGGGGTTGGGGTCGGTCCAGTAACTCCAGTTCCTTCTGGGAGCAGTCCACCACCTCCT GGAGTATCAATTGACTTTTCAAGTTTAGGGGACACATTCACATATCAGCAGCTTCTCCTAGCAACTGGTGACTTTAGAGATGTAAACCTAATCAAACATG GCCATTCAGGGGATCTCTACAAGGGAATCCTGGAAAGTGGGATTCCTGTGGTCATAAAAAAGATCGATTTGCAATCTCATAGGAAGGAAGCGTACTTATT GGAATTGGATTTTTATAGTAAGGTTTCACATTCCAGACTGGTTCCCCTTTTGGGACACTGCTTGGAGAAAGAAAATGAGAAGTTCCTGATTTACAAACAT ATTCCAAATGGAGACTTGTCAAGTTCCTTGTTCAGGAAAACTGATTCAGAAGATGATGGTTTGAAGTCGTTAGATTGGATAACAAGACTGAAAATTGCGA TAGGAGCAGCTGAAAGTCTATCTTATCTGCATCATGAATGCATGCCGCCCATTGTGCACAGAGATGTTCAAGCAAGCAGTATACTCCTTGATGATAAATT TGAAGTGCGGTTAGGGAGCCTGAGTGAAGTCTGTACACAAGAAGGAGATACCCATCAAAGCAGGATTTCCAGGTTGCTGCGATTGCCTCAGTCATTGGAA CAAGGTACTTCTGGTTCATTGACAGCCACGTGTGCCTACGATGTTTATTGCTTTGGGAAGGTACTACTTGAGTTGGTTACTGGAAAGCTGGGCATTAGTG CATCTAGTGATGCCCAGCTTAAGGAATTTTCAGAACAGATTCTACCGTACATTAGCATCTACGACAAGGAACTTCTAATCAAAATTGTGGATCCATCTCT GATCATCGACGAGGATCTGTTGGAGGAAGTTTGGGCGATGGCCATTGTTGCGAGGTCTTGCCTCAATCCAAAGCCTTCAAGGCGCCCCATTATGAGATAC ATCCTTAAGGCTTTGGAAAATCCTTTGAAGGTAGTGAGGGAAGAAAATTCTGGTTCCGCAAGGCTTAGAACAACATCTTCTAGATCTTGGAATGCTTCTC TATTTGGGAGTTGGCGTCACAGCTCATCTGATGTAGCAGTCATTCCAGCAACCTCTAGTGCCAGGCCAGAAGGAGGAAGTAGTTTTAAACGGTCAGGAAC TTCAAATTCACAGGGTAGTGGCCAAAATGGCAGCGGCAACCATTCATCTTCAATGAGACGGCATTCTAGAGAGATTTTCCCTGAACCATCTGATGAACAA GATGTAGAGAGACAGAATTAA
AA sequence Show only first row Show all	>Potri.004G155100.1 pacid=42795153 polypeptide=Potri.004G155100.1.p locus=Potri.004G155100 ID=Potri.004G155100.1.v4.1 annot-version=v4.1 MVDQKIVLALKFLLLVLFFESTFEQQQQERLNSPIERAALLELRSSLGLRSKDWPRKADPCSVWNGIKCENGSVSEINISGFRRTRLGSQNPQFSVDSLV NLTRLKSFNASGFYLPGSIPDWFGQRLVSLQVLDLSSCLISNAIPESLGNLTSLTGLYLHDNNFTGMIPSSLGLLVGLSVLDLSANKFTGSIPVSFGSLQ NLTRLDISKNFLFGSIPLGIGMLSKLQYLNLSSNNLSSSIPPQLGDLSNLADFDLSFNSLSGSLPAELRGLRNLQRMLIGNNLLGGFLPVNLFPVPSQLQ TVVLKRNGFSGSVPDLLWSIPQLRLLDISGNNFTGILPNGSLNANASSAELNISENLFYGGLTPTLRRFLVVDLSGNYFEGTVPDYVSDNASLVSNCLQN SSNQRSLLDCTSFYTEKGLTFDNFGLPNSTQPPAGENTGKNNKKVIIWASVLGGVGLILLLVILLVLLLFCIRKRGTMTQGGVGVGPVTPVPSGSSPPPP GVSIDFSSLGDTFTYQQLLLATGDFRDVNLIKHGHSGDLYKGILESGIPVVIKKIDLQSHRKEAYLLELDFYSKVSHSRLVPLLGHCLEKENEKFLIYKH IPNGDLSSSLFRKTDSEDDGLKSLDWITRLKIAIGAAESLSYLHHECMPPIVHRDVQASSILLDDKFEVRLGSLSEVCTQEGDTHQSRISRLLRLPQSLE QGTSGSLTATCAYDVYCFGKVLLELVTGKLGISASSDAQLKEFSEQILPYISIYDKELLIKIVDPSLIIDEDLLEEVWAMAIVARSCLNPKPSRRPIMRY ILKALENPLKVVREENSGSARLRTTSSRSWNASLFGSWRHSSSDVAVIPATSSARPEGGSSFKRSGTSNSQGSGQNGSGNHSSSMRRHSREIFPEPSDEQ DVERQN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G16250			Leucine-rich repeat protein ki...		Potri.004G155100 [exp]	0	1
AT5G28530	FAR1_related	FRS10	FAR1-related sequence 10 (.1)		Potri.014G167000 [exp]	11.91	0.6450
AT1G34670	MYB	ATMYB93	myb domain protein 93 (.1)		Potri.002G096800 [exp]	12.84	0.6316
AT1G66920			Protein kinase superfamily pro...		Potri.010G118300 [exp]	13.26	0.6317
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Potri.018G145800 [exp]	14.83	0.6183	Pt-CSARF2.3
AT1G67570			Protein of unknown function (D...		Potri.015G092200 [exp]	18.33	0.5583
AT4G24240	WRKY	ATWRKY7, WRKY7	WRKY DNA-binding protein 7 (.1...		Potri.005G141400 [exp]	19.79	0.6045	Pt-WRKY15.2
AT5G64500			Major facilitator superfamily ...		Potri.009G081100 [exp]	21.21	0.5876
AT5G05830			RING/FYVE/PHD zinc finger supe...		Potri.004G059200 [exp]	25.51	0.6099
AT3G26720			Glycosyl hydrolase family 38 p...		Potri.002G238200 [exp]	29.08	0.6041
AT5G40740			unknown protein		Potri.001G337700 [exp]	32.78	0.5754

Compare expression of checked genes

Potri.004G155100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.