Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19440 899 / 0 KCS4 3-ketoacyl-CoA synthase 4 (.1) AT2G16280 857 / 0 KCS9 3-ketoacyl-CoA synthase 9 (.1) AT4G34510 752 / 0 KCS17, KCS2 3-ketoacyl-CoA synthase 17 (.1) AT2G26640 703 / 0 KCS11 3-ketoacyl-CoA synthase 11 (.1) AT1G68530 685 / 0 KCS6, CER6, POP1, G2, CUT1 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) AT1G25450 664 / 0 KCS5, CER60 ECERIFERUM 60, 3-ketoacyl-CoA synthase 5 (.1) AT1G04220 659 / 0 KCS2 3-ketoacyl-CoA synthase 2 (.1) AT4G34520 653 / 0 KCS18, FAE1 FATTY ACID ELONGATION1, 3-ketoacyl-CoA synthase 18 (.1) AT5G43760 637 / 0 KCS20 3-ketoacyl-CoA synthase 20 (.1) AT1G01120 637 / 0 KCS1 3-ketoacyl-CoA synthase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G116700 [exp] 989 / 0 AT1G19440 899 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Potri.014G196200 [exp] 884 / 0 AT1G19440 854 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Potri.018G032200 [exp] 725 / 0 AT2G26640 867 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.006G249200 [exp] 714 / 0 AT2G26640 886 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G125300 [exp] 698 / 0 AT1G68530 915 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) Potri.008G160000 [exp] 691 / 0 AT2G26640 821 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.008G120300 [exp] 689 / 0 AT1G68530 895 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) Potri.010G079500 [exp] 667 / 0 AT2G26640 758 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G080200 [exp] 667 / 0 AT2G26640 759 / 0.0 3-ketoacyl-CoA synthase 11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026345 [exp] 910 / 0 AT1G19440 889 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10042318 [exp] 905 / 0 AT1G19440 890 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10002533 [exp] 891 / 0 AT1G19440 890 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10001657 [exp] 888 / 0 AT1G19440 892 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10034319 [exp] 684 / 0 AT1G68530 895 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) Lus10043300 [exp] 683 / 0 AT2G26640 897 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Lus10019446 [exp] 682 / 0 AT2G26640 897 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Lus10041452 [exp] 680 / 0 AT1G25450 890 / 0.0 ECERIFERUM 60, 3-ketoacyl-CoA synthase 5 (.1) Lus10030209 [exp] 650 / 0 AT1G01120 845 / 0.0 3-ketoacyl-CoA synthase 1 (.1) Lus10002691 [exp] 649 / 0 AT1G01120 845 / 0.0 3-ketoacyl-CoA synthase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [poplar] [flax] Thiolase PF08392 [poplar] [flax] FAE1_CUT1_RppA FAE1/Type III polyketide synthase-like protein CL0046 [poplar] [flax] Thiolase PF08541 [poplar] [flax] ACP_syn_III_C 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Representative CDS sequence Show only first row Show all	>Potri.004G155600.1 pacid=42794044 polypeptide=Potri.004G155600.1.p locus=Potri.004G155600 ID=Potri.004G155600.1.v4.1 annot-version=v4.1 ATGAACAACCCCCCTGAAACCGAATCCACCACCACCAATGGAGTCCAGATCCGACAATCACGAAGATTGCCTGATTTCTTGCAAAGTGTGAATCTTAAGT ATGTCAAGTTGGGTTATCATTATTTGATAACTCATTTGTTGACTCTGTGTTTTGTCCCTTTAATAGCTTTTGTTATTTTTCAAGCTTCTCAATTGAACCC AAATGACATTCACCAGCTTTGGCTTCACCTTCAATATAATCTTGTAAGTGTCATTATTTGTTCTGTTTTTCTTGTCTTTGGAGCCACGGTTTATATCGTG ACCAGGCCCAGATCCGTTTATCTTGTTGATTATGCTTGTTATAAGCCTCCAGCAAAGTTGCAAGTCAAATATGAACAATTCATGGAGCATTCAAAGCTGA CTGGTGATTTTGACGATTCTTCATTGGAATTTCAAAGGAGGATCTTGGAAAGATCAGGCCTTGGTGAAGAAACTTATGCTCCTGAAGCTATGCATTATAT TCCACCAAGACCATCAATGGCAGCAGCAAGAGAAGAGGCAGAGCAGGTGATGTTTGGTGCACTGGATGTTTTATTTGCAAACACTAATATCAAGCCTAAA GATATTGGTGTTCTTGTTGTAAATTGTAGTTTGTTTAATCCTACACCATCACTCTCTGCAATGATTGTTAACAAGTATAAATTGAGAGGGAATATTAGGA CCTTTAATCTTGGGGGTATGGGGTGTAGTGCTGGGGTTATTGCTGTTGACCTTGCTAAAGATATGTTGCAAATCCATAGGAATACTTGTGCTGTTGTTGT GAGTACTGAGAACATTACACAGAATTGGTATTTTGGGAACAAGAAGTCAATGCTGATACCTAATTGCTTGTTTAGAGTCGGGGGTTCTGCTGTTTTATTG TCGAATAAAGCTAAAGACAGGAGAAGAGCAAAGTATAAGCTTGTTCATGTGGTTAGAACCCATAAAGGAGCTGATGATAAGGCGTTCAAGTGTGTTTATC AGGAGCAGGATGATGCTGGGAAAACAGGGGTTTCTTTGTCAAAAGATCTCATGGCAATTGCTGGTGGTGCACTTAAGACTAATATTACAACCTTGGGTCC TTTGGTTCTTCCGATTAGTGAGCAACTTTTGTTCTTCTCAACTTTAGTTGCTAAGAAATTGTTCAATGCAAAAGTGAAGCCGTATATCCCAGATTTTAAG CTTGCCTTCGATCATTTCTGTATTCATGCTGGAGGGAGAGCCGTGATTGATGAGCTTGAGAAGAATCTGCAGCTTTTGCCTATTCACGTTGAAGCTTCCA GGATGACTCTGCATCGGTTTGGCAACACTTCATCAAGCTCAATTTGGTACGAGTTGGCTTACACCGAGGCAAAGGGAAGAGTGCGGAGGGGGAACCGGGT GTGGCAGATTGCTTTTGGCAGTGGTTTCAAGTGCAACAGTGCAGTTTGGGAGGCTCTGAGGTATGTTAAGCCATCTACTAGTAATCCATGGGAGGATTGC ATTGACAAGTATCCAGTGCAGATAGTCATGTAG
AA sequence Show only first row Show all	>Potri.004G155600.1 pacid=42794044 polypeptide=Potri.004G155600.1.p locus=Potri.004G155600 ID=Potri.004G155600.1.v4.1 annot-version=v4.1 MNNPPETESTTTNGVQIRQSRRLPDFLQSVNLKYVKLGYHYLITHLLTLCFVPLIAFVIFQASQLNPNDIHQLWLHLQYNLVSVIICSVFLVFGATVYIV TRPRSVYLVDYACYKPPAKLQVKYEQFMEHSKLTGDFDDSSLEFQRRILERSGLGEETYAPEAMHYIPPRPSMAAAREEAEQVMFGALDVLFANTNIKPK DIGVLVVNCSLFNPTPSLSAMIVNKYKLRGNIRTFNLGGMGCSAGVIAVDLAKDMLQIHRNTCAVVVSTENITQNWYFGNKKSMLIPNCLFRVGGSAVLL SNKAKDRRRAKYKLVHVVRTHKGADDKAFKCVYQEQDDAGKTGVSLSKDLMAIAGGALKTNITTLGPLVLPISEQLLFFSTLVAKKLFNAKVKPYIPDFK LAFDHFCIHAGGRAVIDELEKNLQLLPIHVEASRMTLHRFGNTSSSSIWYELAYTEAKGRVRRGNRVWQIAFGSGFKCNSAVWEALRYVKPSTSNPWEDC IDKYPVQIVM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G19440		KCS4	3-ketoacyl-CoA synthase 4 (.1)		Potri.004G155600 [exp]	0	1
AT4G01370		ATMPK4	MAP kinase 4 (.1)		Potri.003G131800 [exp]	4.69	0.6323	MMK3.1
AT1G17720		ATBBETA, ATB BE...	Protein phosphatase 2A, regula...		Potri.001G197300 [exp]	8.12	0.6075	Pt-ATB.1
AT5G49810		MMT	methionine S-methyltransferase...		Potri.004G229800 [exp]	17.86	0.5513	Pt-MMT.1,MMT
AT3G14690		CYP72A15	"cytochrome P450, family 72, s...		Potri.011G101700 [exp]	18.89	0.5942
AT3G14630		CYP72A9	"cytochrome P450, family 72, s...		Potri.011G099701 [exp]	27.23	0.5751
AT4G34640		ERG9, SQS1	squalene synthase 1 (.1)		Potri.004G161200 [exp]	31.12	0.5612
AT1G66680		AR401	S-adenosyl-L-methionine-depend...		Potri.015G062400 [exp]	31.43	0.6060	Pt-AR401.1
AT2G46800		ATMTP1, ZAT1, Z...	ZINC TRANSPORTER OF ARABIDOPSI...		Potri.001G450900 [exp]	33.22	0.5936
AT2G02390		GST18, ATGSTZ1	GLUTATHIONE S-TRANSFERASE 18, ...		Potri.014G069600 [exp]	42.72	0.5555
AT2G13560		NAD-ME1	NAD-dependent malic enzyme 1 (...		Potri.014G043700 [exp]	46.13	0.5518

Compare expression of checked genes

Potri.004G155600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.