Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18360 340 / 3e-117 alpha/beta-Hydrolases superfamily protein (.1) AT4G36610 321 / 7e-110 alpha/beta-Hydrolases superfamily protein (.1) AT5G21950 169 / 3e-50 alpha/beta-Hydrolases superfamily protein (.1) AT4G33180 157 / 6e-46 alpha/beta-Hydrolases superfamily protein (.1) AT1G78210 152 / 4e-44 alpha/beta-Hydrolases superfamily protein (.1) AT4G39955 145 / 4e-41 alpha/beta-Hydrolases superfamily protein (.1) AT1G17430 138 / 2e-38 alpha/beta-Hydrolases superfamily protein (.1) AT5G09430 137 / 5e-38 alpha/beta-Hydrolases superfamily protein (.1) AT1G72620 134 / 7e-37 alpha/beta-Hydrolases superfamily protein (.1) AT1G13820 50 / 7e-07 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G116900 [exp] 454 / 1e-162 AT2G18360 324 / 3e-111 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G155700 [exp] 447 / 1e-159 AT2G18360 317 / 4e-108 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G116800 [exp] 445 / 2e-158 AT2G18360 316 / 2e-107 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G117000 [exp] 404 / 1e-142 AT2G18360 311 / 7e-106 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G117100 [exp] 380 / 5e-133 AT2G18360 304 / 4e-103 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G122600 [exp] 370 / 4e-129 AT2G18360 444 / 5e-158 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G024400 [exp] 365 / 4e-127 AT2G18360 452 / 2e-161 alpha/beta-Hydrolases superfamily protein (.1) Potri.006G219400 [exp] 167 / 8e-50 AT4G33180 329 / 3e-113 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G094700 [exp] 164 / 2e-48 AT4G39955 400 / 1e-140 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041747 [exp] 345 / 3e-119 AT2G18360 436 / 1e-154 alpha/beta-Hydrolases superfamily protein (.1) Lus10025873 [exp] 262 / 1e-86 AT2G18360 243 / 2e-79 alpha/beta-Hydrolases superfamily protein (.1) Lus10038076 [exp] 154 / 2e-44 AT4G33180 333 / 8e-115 alpha/beta-Hydrolases superfamily protein (.1) Lus10023147 [exp] 152 / 8e-44 AT4G39955 414 / 3e-146 alpha/beta-Hydrolases superfamily protein (.1) Lus10020926 [exp] 145 / 4e-41 AT1G78210 358 / 3e-124 alpha/beta-Hydrolases superfamily protein (.1) Lus10019631 [exp] 145 / 5e-41 AT1G72620 270 / 3e-89 alpha/beta-Hydrolases superfamily protein (.1) Lus10000630 [exp] 143 / 2e-40 AT4G39955 386 / 2e-135 alpha/beta-Hydrolases superfamily protein (.1) Lus10012409 [exp] 139 / 1e-38 AT1G17430 259 / 1e-84 alpha/beta-Hydrolases superfamily protein (.1) Lus10028302 [exp] 136 / 2e-38 AT2G18360 172 / 1e-52 alpha/beta-Hydrolases superfamily protein (.1) Lus10022106 [exp] 130 / 2e-35 AT1G72620 264 / 4e-87 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF00561 [poplar] [flax] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Potri.004G155800.1 pacid=42793756 polypeptide=Potri.004G155800.1.p locus=Potri.004G155800 ID=Potri.004G155800.1.v4.1 annot-version=v4.1 ATGGTGAACGTTTTAACAATGTACATGTCATTGTTGCGTGCCCTAATGAAGCTAGTCGGCGTGAAACCTCAAGCAGTAGAGATTGAGCCAGGGACAGTGA TGCGCTTTTGGGTCCCAAGTGATCAGACCACGAGCAACACCAAGAACAAACCAGATAAACCCGCCGTGGTGTTTGTTCATGGTTTTGAACTAGACGGAAT TCTAACATGGCAATTTCAAGTGCTAGCTTTGGCCAAAGAGTACGCAGTTTACGTGCCCGATTTACTCTTCTTCGGAGAGTCAATTACGGATAAAAAAGAG AGAAAAGTGGCTTTCCAAGCTGAGTGCACTGCTAAGGGTCTAACGAAGCTTGGTGTGGAGAAGTGTACTCTGGTTGGGATGAGCTACGGAGGGGTTGTTT GCTTCAAGATGGCTGAGATGTACCCTGACTTGGTTGAGTCAATGGTGGTCGGCTGCACAGTTATGGCCATGACTGAATCCATCAGTCGTGCTGGCCTGGA GAGAATTGGCTTCTCATCTTGGTCAGAATACTTGATGCCTGACACGGTCAAAGGGGTGAAAGATTTATTGCTTGTTGCGACCTATAAGTTGCCATGGATG CCAGATTTTGTTTTCAAATCCATCTTGGAGGTCATGTTTGACAACAGGAAGGAGAGACTTGAACTTCTTCAGGAATTAGTTGTTAGTGATAAGGATTTCA TTGTCCCTCGTTTTTCACAGAAAATACACCTACTGTGGGGAGGGGATGACATAATTTTCAACATGGAAGAAGCTCGCAACTTAAAAGAGCAACTAGAAGG CAAAGCAACGTTGCAGTTCATAGAGAATGCAGGCCACCTGGTTCAATCGGAGCGACCTTCTGCCTACAATAAGCACCTCAAGAAAATCCTTGCCTCTTTG CACGAAGATGGAAAGAAAAAATAA
AA sequence Show only first row Show all	>Potri.004G155800.1 pacid=42793756 polypeptide=Potri.004G155800.1.p locus=Potri.004G155800 ID=Potri.004G155800.1.v4.1 annot-version=v4.1 MVNVLTMYMSLLRALMKLVGVKPQAVEIEPGTVMRFWVPSDQTTSNTKNKPDKPAVVFVHGFELDGILTWQFQVLALAKEYAVYVPDLLFFGESITDKKE RKVAFQAECTAKGLTKLGVEKCTLVGMSYGGVVCFKMAEMYPDLVESMVVGCTVMAMTESISRAGLERIGFSSWSEYLMPDTVKGVKDLLLVATYKLPWM PDFVFKSILEVMFDNRKERLELLQELVVSDKDFIVPRFSQKIHLLWGGDDIIFNMEEARNLKEQLEGKATLQFIENAGHLVQSERPSAYNKHLKKILASL HEDGKKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G18360			alpha/beta-Hydrolases superfam...		Potri.004G155800 [exp]	0	1
					Potri.002G252400 [exp]	2.23	0.9400
AT5G62230		ERL1	ERECTA-like 1 (.1.2)		Potri.012G130400 [exp]	3.16	0.9360	ERL1.2
AT5G28300	Trihelix		Duplicated homeodomain-like su...		Potri.013G039100 [exp]	5.47	0.9218
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Potri.018G051400 [exp]	5.47	0.9311
AT2G46810	bHLH	bHLH070	basic helix-loop-helix (bHLH) ...		Potri.014G106300 [exp]	6.48	0.9194
AT3G59420		ACR4	crinkly4 (.1)		Potri.017G029900 [exp]	6.92	0.9291	Pt-ACR4.2
AT5G46880	HD	HDG5, HB-7	HOMEODOMAIN GLABROUS 5, homeob...		Potri.003G096000 [exp]	9.21	0.9273
AT2G26330		QRP1, ER	QUANTITATIVE RESISTANCE TO PLE...		Potri.006G220100 [exp]	10.95	0.9165
AT5G48270			Plant protein of unknown funct...		Potri.010G047700 [exp]	11.40	0.9139
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.001G014401 [exp]	17.86	0.8730

Compare expression of checked genes

Potri.004G155800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.