Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34530 206 / 8e-63 bHLH bHLH063, CIB1 cryptochrome-interacting basic-helix-loop-helix 1 (.1) AT2G18300 181 / 3e-53 bHLH bHLH064, HBI1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT1G68920 175 / 2e-49 bHLH bHLH049, ACE1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT3G07340 173 / 6e-49 bHLH bHLH062 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G36540 167 / 3e-48 bHLH bHLH058, BEE2 BR enhanced expression 2 (.1.2) AT1G10120 167 / 9e-48 bHLH bHLH074, CIB4 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G26260 166 / 2e-47 bHLH CIB5, bHLH076 cryptochrome-interacting basic-helix-loop-helix 5 (.1.2.3) AT3G23690 161 / 2e-45 bHLH bHLH077 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G48560 163 / 5e-45 bHLH bHLH078 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G59640 147 / 3e-41 bHLH ZCW32, bHLH031, BPE, BPEUB, BPEP BIG PETAL UB, BIG PETAL P (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G117300 [exp] 649 / 0 AT4G34530 213 / 2e-65 cryptochrome-interacting basic-helix-loop-helix 1 (.1) Potri.005G121850 [exp] 221 / 4e-68 AT4G34530 177 / 3e-52 cryptochrome-interacting basic-helix-loop-helix 1 (.1) Potri.007G023600 [exp] 209 / 3e-63 AT2G18300 182 / 3e-54 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.002G235400 [exp] 191 / 9e-55 AT3G07340 257 / 2e-79 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G148900 [exp] 187 / 2e-53 AT3G07340 254 / 2e-78 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G248500 [exp] 181 / 4e-51 AT3G07340 349 / 5e-115 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.010G136100 [exp] 178 / 4e-50 AT1G68920 387 / 3e-129 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.008G113200 [exp] 174 / 2e-48 AT1G68920 388 / 1e-129 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.002G114700 [exp] 167 / 4e-47 AT1G10120 274 / 3e-89 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040448 [exp] 266 / 3e-86 AT4G34530 177 / 4e-53 cryptochrome-interacting basic-helix-loop-helix 1 (.1) Lus10023562 [exp] 251 / 2e-80 AT1G26260 178 / 9e-54 cryptochrome-interacting basic-helix-loop-helix 5 (.1.2.3) Lus10026008 [exp] 184 / 1e-54 AT2G18300 168 / 8e-50 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10013052 [exp] 177 / 4e-50 AT1G68920 316 / 2e-102 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10030581 [exp] 179 / 1e-48 AT1G68930 910 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10030908 [exp] 177 / 2e-48 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10029110 [exp] 172 / 2e-48 AT1G68920 320 / 5e-104 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10003172 [exp] 167 / 5e-48 AT5G48560 205 / 4e-62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10014300 [exp] 164 / 7e-47 AT2G18300 171 / 3e-51 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10040506 [exp] 162 / 9e-46 AT3G57800 275 / 3e-90 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [poplar] [flax] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.004G156000.2 pacid=42794998 polypeptide=Potri.004G156000.2.p locus=Potri.004G156000 ID=Potri.004G156000.2.v4.1 annot-version=v4.1 ATGATTAATAAAGCTTTGTTATCAGCTGGTGGAGAGAACATGCTGCACTGTACAGACATGACAGTGCTTGATAGACAAAGGGCTCGTATCAAATGGCAAC AAGAACAACAGCAGCATCAGGTTCAACTACCACAGCAAGAGATTAGTTATTTTAGTGAATTGAGTAGGGTGTTCCAACAAGCTGGGTTTCATGAGGGTGG GTTAAGTGAGGTGGTGACCCGGTCTGTGAAACCTGACCCGGGTTTTGTGGATAATAGGTGGCATAATGATCATGTTGTGGGGTTTGGTGTTGGGCCTCCT TATACTAATGGGTTGGGTTTTGAGTTGAATTATGGTGCCATTTCTAGGACTTCTAGCTGCCCACCGGCGGTAGCCGCTGCGGCTACGGCTACTGCTACAG TGAGAGGTGCAGAGTCTGTTGTGTCAGATAAGATTAGTTCCGGGGTTGGCAGAGAGAGTTCCAAGAAGAGAAAGTTTGATAAGGTTGTTGCAGAAGAGGA CAGCAGGGACAAAAGGATCAAAGGACGTGCGGAGGAAGGGGAGTCAAACACCTCAGAGAAAAATAACAACAAAAGCAGTAGCAGCAATAACAACAGCAAC AAAAACAATAACAGTAACAAAGACAATTCCGCCGAGACTTCGAAGGACAATTCCAAAGTAACTGAGGTTCAAAAGCCAGATTACATTCATGTCCGGGCAC GTCGCGGTCAAGCTACCGACAGCCACAGCTTAGCTGAAAGAGTGAGGAGAGAAAAAATCAGTGAAAGAATGAAGTATCTGCAAGATTTGGTACCAGGGTG CAATAATATCACAGGAAAGGCAGGCATGCTTGATGAAATCATTAACTATGTTCAATCTCTTCAGAGACAAGTAGAGTTCTTGTCGATGAAACTAGCTGCT GTAAATCCAAGGCTTGACTTCAACATTGACAACTTATTTGCCAAAGAGGCTTTTCCTGCTTGTTCAACCAATTTCCCCGCAATTGGGATGTCACCGGATA TGACTAACGCTGCATACCTTCAATTTAATCCAGCACAACAACAATTAGTTTCATGCTGTGGATTGGATATGGGGATAAATCCTCCTGATATGGGGCTTAG AAGGACCACTAGTACTCCTGTATCTATTCCCGAAACATTTCTTGACTCATCCTGCTTCACTCAAATCCAGGCCCCACCAACTTGGGATGCTGATCTACCA AATCTTTACAATGTAGCATTTGATCAAGGGAGACAAACAACCTTCCCAGTTCAGCCATTTTCAGGTTCTGTTGAAGCTAGCAATCTGAAGATGGAGATGT GA
AA sequence Show only first row Show all	>Potri.004G156000.2 pacid=42794998 polypeptide=Potri.004G156000.2.p locus=Potri.004G156000 ID=Potri.004G156000.2.v4.1 annot-version=v4.1 MINKALLSAGGENMLHCTDMTVLDRQRARIKWQQEQQQHQVQLPQQEISYFSELSRVFQQAGFHEGGLSEVVTRSVKPDPGFVDNRWHNDHVVGFGVGPP YTNGLGFELNYGAISRTSSCPPAVAAAATATATVRGAESVVSDKISSGVGRESSKKRKFDKVVAEEDSRDKRIKGRAEEGESNTSEKNNNKSSSSNNNSN KNNNSNKDNSAETSKDNSKVTEVQKPDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNNITGKAGMLDEIINYVQSLQRQVEFLSMKLAA VNPRLDFNIDNLFAKEAFPACSTNFPAIGMSPDMTNAAYLQFNPAQQQLVSCCGLDMGINPPDMGLRRTTSTPVSIPETFLDSSCFTQIQAPPTWDADLP NLYNVAFDQGRQTTFPVQPFSGSVEASNLKMEM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G34530	bHLH	bHLH063, CIB1	cryptochrome-interacting basic...		Potri.004G156000 [exp]	0	1
AT1G67070		PMI2, DIN9	PHOSPHOMANNOSE ISOMERASE 2, DA...		Potri.004G099100 [exp]	2.82	0.6185	DIN9.2
AT3G48900			single-stranded DNA endonuclea...		Potri.015G142800 [exp]	22.97	0.5955
AT5G44680			DNA glycosylase superfamily pr...		Potri.008G081000 [exp]	25.00	0.5689
AT2G40475		ASG8	ALTERED SEED GERMINATION 8, un...		Potri.006G107200 [exp]	40.36	0.5440
AT1G79420			Protein of unknown function (D...		Potri.008G081700 [exp]	61.95	0.5226
AT3G25070		RIN4	RPM1 interacting protein 4 (.1...		Potri.004G002500 [exp]	63.45	0.5019
AT4G34770			SAUR-like auxin-responsive pro...		Potri.004G165800 [exp]	72.51	0.5138
AT3G28960			Transmembrane amino acid trans...		Potri.018G099700 [exp]	80.42	0.4912
AT4G02390		ATPARP1, APP	POLY\(ADP-RIBOSE\) POLYMERASE ...		Potri.009G136501 [exp]	83.42	0.4892
AT1G30620		MURUS4, HSR8, U...	UDP-D-XYLOSE 4-EPIMERASE 1, MU...		Potri.016G020000 [exp]	119.41	0.4889

Compare expression of checked genes

Potri.004G156000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.