Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21610 456 / 5e-162 PE11, ATPE11 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) AT5G19730 283 / 4e-93 Pectin lyase-like superfamily protein (.1) AT5G47500 262 / 1e-85 PME5 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1) AT5G07430 258 / 7e-84 Pectin lyase-like superfamily protein (.1) AT2G36710 255 / 3e-82 Pectin lyase-like superfamily protein (.1) AT5G55590 251 / 5e-81 QRT1 QUARTET 1, Pectin lyase-like superfamily protein (.1) AT3G29090 249 / 6e-81 PME31, ATPME31 A. THALIANA PECTIN METHYLESTERASE 31, pectin methylesterase 31 (.1) AT5G07420 246 / 3e-79 Pectin lyase-like superfamily protein (.1) AT2G36700 238 / 2e-76 Pectin lyase-like superfamily protein (.1) AT3G17060 237 / 6e-76 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G068400 [exp] 273 / 1e-89 AT5G19730 603 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.007G015700 [exp] 266 / 7e-87 AT5G19730 472 / 2e-167 Pectin lyase-like superfamily protein (.1) Potri.003G076900 [exp] 258 / 9e-84 AT5G47500 554 / 0.0 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1) Potri.014G117100 [exp] 255 / 1e-82 AT5G19730 320 / 3e-107 Pectin lyase-like superfamily protein (.1) Potri.001G365700 [exp] 254 / 2e-81 AT5G55590 429 / 1e-149 QUARTET 1, Pectin lyase-like superfamily protein (.1) Potri.006G120100 [exp] 250 / 4e-80 AT2G36710 449 / 3e-157 Pectin lyase-like superfamily protein (.1) Potri.004G128820 [exp] 246 / 6e-80 AT3G29090 562 / 0.0 A. THALIANA PECTIN METHYLESTERASE 31, pectin methylesterase 31 (.1) Potri.008G104800 [exp] 238 / 3e-76 AT3G17060 477 / 5e-170 Pectin lyase-like superfamily protein (.1) Potri.005G012800 [exp] 229 / 5e-73 AT5G18990 281 / 1e-93 Pectin lyase-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026347 [exp] 458 / 1e-162 AT2G21610 399 / 2e-139 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) Lus10042315 [exp] 424 / 3e-149 AT2G21610 383 / 5e-133 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) Lus10023560 [exp] 422 / 3e-148 AT2G21610 368 / 4e-127 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) Lus10012942 [exp] 276 / 1e-90 AT5G19730 594 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10043035 [exp] 264 / 2e-86 AT5G19730 555 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10000045 [exp] 259 / 3e-86 AT2G21610 214 / 8e-69 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) Lus10011132 [exp] 264 / 6e-86 AT5G19730 575 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10028364 [exp] 260 / 3e-85 AT5G19730 437 / 4e-154 Pectin lyase-like superfamily protein (.1) Lus10004720 [exp] 261 / 6e-85 AT5G47500 519 / 0.0 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1) Lus10041815 [exp] 257 / 3e-83 AT5G19730 446 / 1e-156 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF01095 [poplar] [flax] Pectinesterase Pectinesterase
Representative CDS sequence Show only first row Show all	>Potri.004G156300.1 pacid=42796712 polypeptide=Potri.004G156300.1.p locus=Potri.004G156300 ID=Potri.004G156300.1.v4.1 annot-version=v4.1 ATGGGTTCTGCTACAATGAAGGTTTATGCAGCTTATATTGCTGTGATTTTAGCTCATTTTGCTTTACTTTCCCTCATGTCTGCCGCTACCACTGGATCAA TAGACATGTCAACTGCTATTCTGATAAGGGTTGAACAGTCTGGTAAAGGAGATTTTAAGAAGATACAAGATGCCATTGACTCTGTTCCATCTAATAACTC TGAATTGGTTTTCATTTGGGTTAAGCCAGGAACTTACAGAGAAAAGATTGTTGTTCCTGCCGATAAGCCCTTCATAACATTGAGTGGCACACAGCCTTCA GACACTATAATAACATGGAATGATGGTGGGAACATAATGGAGTCTCCTACACTAACTGTACTGGCTTCTGATTTTGTTGGTCGATATCTCACTATTCAGA ATACATTTGGAAGCGCAGGCAAAGCTGTTGCACTAAGGGTGTCAGGAGATAGAGCTGCATTCTATGGTTGCAGGATTCTTTCTTATCAGGATACTCTCCT CGACGACACTGGATCACATTATTATAGCAATTGCTACATTGAAGGAGCCACAGATTTCATATGCGGAAATGCTGCTTCGCTCTTTGAAAGGTGTCATTTA CATTCAATTTCCACAAATAATGGATCTATTACCGCTCAACATAGGAACTTGGCATCTGAGAATACTGGCCTTGTCTTCTTGGGTTGCAAAATCACCGGTG CCGGAACTACATTTCTAGGACGGCCATGGGGTGCTTATTCTAGGGTGCTGTATGCCTTCACTTACATGTCAGGTGTGATAGCTCCTGCAGGGTGGGATGA TTGGGCTGACCCAAGCAAGCATAGTACGGTGTTCTACGCCGAATACAAGTGTTATGGTCCTGGAGCTGATAGATCTAAGAGGGTTGGATGGTCACAGAGC CTGTCCAATGACGATGCTGCACCCTTGTTAACCAAAGACATGATCGGAGGGAGTAGTTGGCTCAGACCTGCACCAACCTCCTTCAAACGAGGCTCTACCA TTATTAAGCCTGGCAGCAAATTGTGA
AA sequence Show only first row Show all	>Potri.004G156300.1 pacid=42796712 polypeptide=Potri.004G156300.1.p locus=Potri.004G156300 ID=Potri.004G156300.1.v4.1 annot-version=v4.1 MGSATMKVYAAYIAVILAHFALLSLMSAATTGSIDMSTAILIRVEQSGKGDFKKIQDAIDSVPSNNSELVFIWVKPGTYREKIVVPADKPFITLSGTQPS DTIITWNDGGNIMESPTLTVLASDFVGRYLTIQNTFGSAGKAVALRVSGDRAAFYGCRILSYQDTLLDDTGSHYYSNCYIEGATDFICGNAASLFERCHL HSISTNNGSITAQHRNLASENTGLVFLGCKITGAGTTFLGRPWGAYSRVLYAFTYMSGVIAPAGWDDWADPSKHSTVFYAEYKCYGPGADRSKRVGWSQS LSNDDAAPLLTKDMIGGSSWLRPAPTSFKRGSTIIKPGSKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G21610		PE11, ATPE11	A. THALIANA PECTINESTERASE 11,...		Potri.004G156300 [exp]	0	1
AT1G12100			Bifunctional inhibitor/lipid-t...		Potri.001G121800 [exp]	1.00	0.9948
AT3G53480		PIS1, ABCG37, P...	polar auxin transport inhibito...		Potri.015G006000 [exp]	3.46	0.9920
AT5G14650			Pectin lyase-like superfamily ...		Potri.001G346800 [exp]	5.65	0.9872
AT2G25735			unknown protein		Potri.001G180500 [exp]	5.74	0.9706
AT1G65570			Pectin lyase-like superfamily ...		Potri.010G177601 [exp]	6.00	0.9894
AT1G80830		ATNRAMP1, PMIT1...	natural resistance-associated ...		Potri.005G181000 [exp]	6.00	0.9912
AT2G28160	bHLH	ATFIT1, ATBHLH2...	ARABIDOPSIS FE-DEFICIENCY INDU...		Potri.009G005600 [exp]	6.32	0.9841
AT2G01900			DNAse I-like superfamily prote...		Potri.010G101700 [exp]	7.34	0.9857
AT1G80830		ATNRAMP1, PMIT1...	natural resistance-associated ...		Potri.005G181100 [exp]	8.66	0.9890	Pt-NRAMP1.4
AT2G23440			unknown protein		Potri.007G041500 [exp]	9.16	0.9736

Compare expression of checked genes

Potri.004G156300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.