Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39230 322 / 1e-111 NmrA-like negative transcriptional regulator family protein (.1) AT1G75280 285 / 6e-97 NmrA-like negative transcriptional regulator family protein (.1) AT1G75290 268 / 2e-90 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G75300 255 / 5e-85 NmrA-like negative transcriptional regulator family protein (.1) AT1G19540 240 / 3e-79 NmrA-like negative transcriptional regulator family protein (.1) AT4G34540 179 / 1e-55 NmrA-like negative transcriptional regulator family protein (.1) AT1G32100 173 / 5e-53 ATPRR1 pinoresinol reductase 1 (.1) AT4G13660 170 / 6e-52 ATPRR2 pinoresinol reductase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G118100 [exp] 361 / 5e-127 AT4G39230 501 / 0.0 NmrA-like negative transcriptional regulator family protein (.1) Potri.009G118300 [exp] 323 / 6e-112 AT4G39230 488 / 8e-176 NmrA-like negative transcriptional regulator family protein (.1) Potri.011G168400 [exp] 307 / 3e-105 AT4G39230 448 / 2e-159 NmrA-like negative transcriptional regulator family protein (.1) Potri.007G036500 [exp] 294 / 2e-100 AT4G39230 407 / 1e-143 NmrA-like negative transcriptional regulator family protein (.1) Potri.005G228700 [exp] 282 / 8e-96 AT1G75280 451 / 3e-161 NmrA-like negative transcriptional regulator family protein (.1) Potri.002G034400 [exp] 281 / 9e-96 AT1G75280 467 / 2e-167 NmrA-like negative transcriptional regulator family protein (.1) Potri.009G118000 [exp] 204 / 2e-65 AT4G34540 432 / 7e-154 NmrA-like negative transcriptional regulator family protein (.1) Potri.001G133300 [exp] 192 / 2e-60 AT1G32100 462 / 2e-165 pinoresinol reductase 1 (.1) Potri.007G123700 [exp] 189 / 2e-59 AT1G75280 284 / 4e-95 NmrA-like negative transcriptional regulator family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026350 [exp] 316 / 4e-109 AT4G39230 454 / 3e-162 NmrA-like negative transcriptional regulator family protein (.1) Lus10042311 [exp] 306 / 4e-105 AT4G39230 489 / 4e-176 NmrA-like negative transcriptional regulator family protein (.1) Lus10026351 [exp] 304 / 1e-104 AT4G39230 481 / 4e-173 NmrA-like negative transcriptional regulator family protein (.1) Lus10040442 [exp] 303 / 3e-104 AT4G39230 462 / 2e-165 NmrA-like negative transcriptional regulator family protein (.1) Lus10023557 [exp] 304 / 1e-102 AT4G39230 461 / 2e-162 NmrA-like negative transcriptional regulator family protein (.1) Lus10026348 [exp] 284 / 1e-96 AT4G39230 442 / 2e-157 NmrA-like negative transcriptional regulator family protein (.1) Lus10042313 [exp] 208 / 2e-67 AT4G39230 369 / 2e-129 NmrA-like negative transcriptional regulator family protein (.1) Lus10023558 [exp] 195 / 1e-61 AT4G34540 405 / 7e-143 NmrA-like negative transcriptional regulator family protein (.1) Lus10012145 [exp] 175 / 1e-53 AT1G32100 419 / 2e-148 pinoresinol reductase 1 (.1) Lus10010403 [exp] 174 / 1e-53 AT1G32100 446 / 1e-158 pinoresinol reductase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF05368 [poplar] [flax] NmrA NmrA-like family
Representative CDS sequence Show only first row Show all	>Potri.004G156650.1 pacid=42796658 polypeptide=Potri.004G156650.1.p locus=Potri.004G156650 ID=Potri.004G156650.1.v4.1 annot-version=v4.1 ATGGCAACGAAAAGCAAGATTTTGTTCATTGGAGGGACAGGATACATAGGAAAATTCATTGTGGAAGCTAGTGCTAAGGCAGGCCATCCTACTTCTGTTC TTGTCAGAGACTCCACTCTCTCTAACCCTGGTAAATCCAATGTCATTGACAACTTCAAGAATCTTGGGGTCAATTTCCTCATTGGAGAATTATTTGATCA TGAGAGTTTGGTGAAGGCTATAAAGCAAGTGGATGTGGTGATCTCTACAAGATTTTTCCCATCGGAGTTTGGAAATGATGTGGATAGAGTGCATGCTGTT GAGCCAGCAAAATCAGCATTTGCTACGAAGGCTAACATAAGAAGAGCTATTGAGGCTCAAGGAATTCCGTTCACCTATCCTGGAGCTACTGCTCCTCCAA GAGATAAAGTTGTCATCGTAGGTGATGGAAATCCTAAAGCTGTTTTCAACAAAGAAGATGACATTGCCACCTACACTATCAAAGCAGTAGATGATCCCAG AACCTTGAACAAAATTCTCTACATTAGACTACCCCCAGCCAACACTATCTCATTCAATGACCTTGTGTCCTTGTGGGAGAAGAAGATTGGGAAAACCCTT GAAAGGATCTATGTTCAGAGGAACAACTTCTTAAAAATATCCGAGAAGCTTCAGTTCCAGTAA
AA sequence Show only first row Show all	>Potri.004G156650.1 pacid=42796658 polypeptide=Potri.004G156650.1.p locus=Potri.004G156650 ID=Potri.004G156650.1.v4.1 annot-version=v4.1 MATKSKILFIGGTGYIGKFIVEASAKAGHPTSVLVRDSTLSNPGKSNVIDNFKNLGVNFLIGELFDHESLVKAIKQVDVVISTRFFPSEFGNDVDRVHAV EPAKSAFATKANIRRAIEAQGIPFTYPGATAPPRDKVVIVGDGNPKAVFNKEDDIATYTIKAVDDPRTLNKILYIRLPPANTISFNDLVSLWEKKIGKTL ERIYVQRNNFLKISEKLQFQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G39230			NmrA-like negative transcripti...		Potri.004G156650 [exp]	0	1
AT3G50560			NAD(P)-binding Rossmann-fold s...		Potri.005G136200 [exp]	8.30	0.8994
AT3G53470			unknown protein		Potri.016G084000 [exp]	10.86	0.9259
AT3G17609	bZIP	HYH	HY5-homolog (.1.2.3.4)		Potri.010G004200 [exp]	12.84	0.9183	HY5.1
AT2G24820		AtTic55, TIC55-...	translocon at the inner envelo...		Potri.018G015700 [exp]	14.07	0.9209
AT3G47070			unknown protein		Potri.001G249600 [exp]	14.56	0.9242
AT3G12685			Acid phosphatase/vanadium-depe...		Potri.010G176100 [exp]	16.49	0.9126
AT5G49730		ATFRO6, FRO6	ferric reduction oxidase 6 (.1...		Potri.001G079000 [exp]	18.52	0.9130
AT5G02120		PDE335, OHP	PIGMENT DEFECTIVE 335, one hel...		Potri.006G088200 [exp]	23.32	0.9206
AT5G21222			protein kinase family protein ...		Potri.018G081700 [exp]	25.98	0.8972
AT1G27480			alpha/beta-Hydrolases superfam...		Potri.014G014400 [exp]	28.98	0.9135	Pt-LCAT1.2

Compare expression of checked genes

Potri.004G156650 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.