Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	RER1.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39220 251 / 5e-86 ATRER1A Rer1 family protein (.1) AT2G21600 245 / 2e-83 ATRER1B endoplasmatic reticulum retrieval protein 1B (.1) AT2G23310 178 / 8e-57 ATRER1C1, ATRER1C Rer1 family protein (.1.2) AT2G18240 166 / 4e-52 Rer1 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G118500 [exp] 263 / 2e-90 AT4G39220 224 / 2e-75 Rer1 family protein (.1) Potri.004G156900 [exp] 260 / 2e-89 AT4G39220 245 / 1e-83 Rer1 family protein (.1) Potri.005G228900 [exp] 236 / 6e-80 AT2G21600 235 / 1e-79 endoplasmatic reticulum retrieval protein 1B (.1) Potri.002G034200 [exp] 236 / 7e-80 AT2G21600 265 / 3e-91 endoplasmatic reticulum retrieval protein 1B (.1) Potri.007G047800 [exp] 204 / 2e-67 AT4G39220 194 / 3e-63 Rer1 family protein (.1) Potri.005G141700 [exp] 190 / 2e-61 AT2G23310 200 / 2e-65 Rer1 family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028317 [exp] 201 / 1e-65 AT4G39220 254 / 8e-87 Rer1 family protein (.1) Lus10011502 [exp] 197 / 3e-64 AT4G39220 258 / 3e-88 Rer1 family protein (.1) Lus10028319 [exp] 194 / 1e-63 AT2G21600 249 / 4e-85 endoplasmatic reticulum retrieval protein 1B (.1) Lus10041766 [exp] 194 / 2e-63 AT2G21600 248 / 7e-85 endoplasmatic reticulum retrieval protein 1B (.1) Lus10041765 [exp] 194 / 6e-63 AT4G39220 250 / 5e-85 Rer1 family protein (.1) Lus10019323 [exp] 193 / 1e-62 AT4G39220 259 / 6e-89 Rer1 family protein (.1) Lus10002889 [exp] 99 / 9e-27 AT4G39220 119 / 4e-35 Rer1 family protein (.1) Lus10002890 [exp] 90 / 1e-23 AT4G39220 112 / 7e-33 Rer1 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03248 [poplar] [flax] Rer1 Rer1 family
Representative CDS sequence Show only first row Show all	>Potri.004G156800.1 pacid=42794137 polypeptide=Potri.004G156800.1.p locus=Potri.004G156800 ID=Potri.004G156800.1.v4.1 annot-version=v4.1 ATGGAAGGATTTGGGGATGAGAATGCCTCAGTGGTGTCACCTGTTGCTCGATGGGAACATGATGCATGGAGGATGTATAGATTTTATCTGGATAAGGCTA CACCTCATGCTGTCTATAGGTGGATTGGGACTCTTGTTATAGTGGCTGTCTATTGTTCACGACTTTATTACGTTCGAGGGTTTTACATCATTGTTTATGG GCTCGGGGTATACATAGTGAATTTGTTAAGTGGGTTTTTGTCACTTCTGGTTGATCCTGAACATGCAGATGGTCCTTTGCTTCCGACAAGTTGTTCCGAT GAATTCAAGCCACTCATCCGCCGGCTTCCAGAGTTCAAATTCTGGTACTCCTTCACAAGGGCATTCATCATCGCTTTTGCGATGACATTCTTTCCAGTGT TTGATGTTCCTGTCGTTTGGTCTATATTGCTCTGTTCCTGGACTCTTCTTTTTGTCATCACAATGGGGTATCAAATTAGATACTTGATCAGATACAAGTG TACCCTATTCAACATTGGAAAGCAGAAATACGGTGGTAAGAAATCATCTGCAAGTAACAATGTTTCCTGCATGGCCTGA
AA sequence Show only first row Show all	>Potri.004G156800.1 pacid=42794137 polypeptide=Potri.004G156800.1.p locus=Potri.004G156800 ID=Potri.004G156800.1.v4.1 annot-version=v4.1 MEGFGDENASVVSPVARWEHDAWRMYRFYLDKATPHAVYRWIGTLVIVAVYCSRLYYVRGFYIIVYGLGVYIVNLLSGFLSLLVDPEHADGPLLPTSCSD EFKPLIRRLPEFKFWYSFTRAFIIAFAMTFFPVFDVPVVWSILLCSWTLLFVITMGYQIRYLIRYKCTLFNIGKQKYGGKKSSASNNVSCMA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G39220		ATRER1A	Rer1 family protein (.1)		Potri.004G156800 [exp]	0	1	RER1.3
AT1G12370		UVR2, PHR1	UV RESISTANCE 2, photolyase 1 ...		Potri.001G116800 [exp]	38.82	0.7213	Pt-PHR1.2
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Potri.006G022800 [exp]	164.46	0.6565
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Potri.006G023151 [exp]	187.90	0.6573
AT1G64385			unknown protein		Potri.003G139400 [exp]	236.29	0.6543

Compare expression of checked genes

Potri.004G156800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.