Plant FIBer expression Database

Potri.004G157000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G16365 105 / 8e-24 F-box family protein (.1.2.3.4)
AT4G34550 51 / 9e-07 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G118651
[exp]
914 / 0 AT2G16365 108 / 5e-25 F-box family protein (.1.2.3.4)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023554
[exp]
305 / 2e-93 AT2G16365 132 / 5e-33 F-box family protein (.1.2.3.4)
Lus10040438
[exp]
296 / 5e-90 AT2G16365 128 / 2e-31 F-box family protein (.1.2.3.4)
PFAM info
Representative CDS sequence
>Potri.004G157000.5 pacid=42794108 polypeptide=Potri.004G157000.5.p locus=Potri.004G157000 ID=Potri.004G157000.5.v4.1 annot-version=v4.1
ATGTCTGATCGCGTGCTACAGTCATATCAAGATAGGGATGATATTCCCGTAAAGTCCACGAAGCAGTGCCAGTCTATTTGGATGTCTCATTGGACGCGCG
CGAGTTGCAGGAAAGCAAATGAAGCTCCACAACAATTAGGTCATGATCCTCCGGAAGTTGGTAATGGTAACAAATATCACAGCTTACTTAGTGGGCCAGA
GATGGAAACTGGTAGTTCTAAATTTGTCACGGGACTTGGAGAAGTAAACAAGGGGAAAAGGATCAACGTCATGAACGATAACCTTACAATGAGTCCGAAA
AGGTTGAGGAATGAAATGTTTGAGGGACAGTCTTCTTTTGCGATGTTCAAACCTTCTCAAGATAGGGAGAGTGTTTTATATCTGGAGAATGTTGTGTCCT
CTGGCAATCGTGAAGGAGTCTTAAAGTCACGAATTGGTACCAATTCTGAATATGATGTTTCCCACGGGAGAAATGAGGATCACCTACCCTCAATACCGGC
ACAGGCTCTTCCCGAGGTGGAAATTCAAGAAAGAAAATCTCAGTTTCAGGCCGAAGATCTCAACTTGGTTCCAGAGCAGCGGGTCAAGTCTAATAGTTTC
CTAGAATGGAGTAGCAGAGTTGTTTCTGCACATGTTCAGGATGATTTTGTAAGGTCAACCCCAGATATTGTGCCATATGAATTTGAAGTTGGAAGGGCTC
CAATTCAGCCCTTTTTCTCTAGGTTAGATCACATTAATGAACCAGGCTCTACATCTTTGGTTCATGAGAAGAAAATGAATAAAAATGCAGGTCTTCTCTT
TCGTGATCCCTCAACAAGCAATAATCAGCCAAGAGACTTTTTTGGCAAGTCATTTCACATGATGCCAAATCCTTCTGATTTTGAATTACTTCCTAGGCAG
ATCAGTACCAGAGGTGATAGCCAATTAGGAAAATTATATAATGGATCATATGCACTACCAACACTGCCCTCCGTTCATGATGGGGAGACAATGAGAATAC
GTACTACAATAGACTCCATGGAAGAATTTTCTAGAGGTCCTCCGATGTACACTCAGACCACTCATAGCTTTTTCATAAAAAAAAAGACTGACGTGAACTT
ACCTGATGGTGCTCAGATGTTTAGAGAGTCAGCAATGTCCACTGAAATTAAGGGAAAAATGGTGACTGAACTCCTTGCAATATCTCCGGATTTTGGTTTC
CATGTCAAGCAAGGAGTGAAGCTGCTACCTCTGGACAGCTCCACAGGGAGTGAAGGAAAAGAGAGCACTGGGAATGTTAAGACTTCTGCAGTTGTTAAGG
AGAATGATTCATTAGCTGAAGGAAAAGAAAACACTAAAAATGCCAATACTTCTGCTGTCAATGAAGAGAGTGATTCATCTGCTGAAACTGACACCATGGA
TATGGATGCTTACTGTGAGAACCATCTATCTGGTGTGGCTTCATTGCAATCAGATAAGGACATCAACGAGGGCCAGAAGTTGCCAGCTTCTCAAGCTGGA
ATGCCTTCAGTCAGACAAGAAATCAAGGGCAGACAGATGAACACCGAATTACCTGATATAAACCAAGAACTTATTGTACTTCCAGGTTTGGCAATGTCAC
CAGATAACATGGAGACAAGCACCTCAAGAACCCAGAGTTTGGATGCGGAATGCTTCCTTCCCAATGCCGAGCACTCCACAAATTCAAAATCTGGTGATTG
CCCCGAAGCTCCTGTGAGACTGGACCCCTGCAGCAGATGGTTTAAGCGTCTCAAAGCAAGTGCTTCAAAAGTTGAAGAAGCATCATCCCACCAGAAATTT
AGTAAGTTGTTCAACAAAATGCTAAGACATAGTAAGACTAGTTCAGAACCAAAGACAAGCGAGTCTGATGGTAAAGAGTCTATGCCAGATCAGACTGCAG
AGTTACTGAGGAATGCTGAATCCTATTCAACTGACCCAGCAAGGAAAAGTCAAGAAATAACACTGTCTCATGTTTGGGTTCAGAGGTGGTTTCATAATCC
ATCTGCATCTCCGAAAAAGAAGCCTGGAGCTGTGGTAGTTTCTCTGCCAGAGAGTTCAGAGGCAGCACTAGACTTCCAGAAGAAGCAGTTTCCTAGCACT
GCTGCCATGGCTCTGATGGGGAAGGCCATGAATGGTTTTTGTCCATGTGAATTCAGAAAAAGTGGGTCTTCTGTAGTCTGGAACACCAAGTGA
AA sequence
>Potri.004G157000.5 pacid=42794108 polypeptide=Potri.004G157000.5.p locus=Potri.004G157000 ID=Potri.004G157000.5.v4.1 annot-version=v4.1
MSDRVLQSYQDRDDIPVKSTKQCQSIWMSHWTRASCRKANEAPQQLGHDPPEVGNGNKYHSLLSGPEMETGSSKFVTGLGEVNKGKRINVMNDNLTMSPK
RLRNEMFEGQSSFAMFKPSQDRESVLYLENVVSSGNREGVLKSRIGTNSEYDVSHGRNEDHLPSIPAQALPEVEIQERKSQFQAEDLNLVPEQRVKSNSF
LEWSSRVVSAHVQDDFVRSTPDIVPYEFEVGRAPIQPFFSRLDHINEPGSTSLVHEKKMNKNAGLLFRDPSTSNNQPRDFFGKSFHMMPNPSDFELLPRQ
ISTRGDSQLGKLYNGSYALPTLPSVHDGETMRIRTTIDSMEEFSRGPPMYTQTTHSFFIKKKTDVNLPDGAQMFRESAMSTEIKGKMVTELLAISPDFGF
HVKQGVKLLPLDSSTGSEGKESTGNVKTSAVVKENDSLAEGKENTKNANTSAVNEESDSSAETDTMDMDAYCENHLSGVASLQSDKDINEGQKLPASQAG
MPSVRQEIKGRQMNTELPDINQELIVLPGLAMSPDNMETSTSRTQSLDAECFLPNAEHSTNSKSGDCPEAPVRLDPCSRWFKRLKASASKVEEASSHQKF
SKLFNKMLRHSKTSSEPKTSESDGKESMPDQTAELLRNAESYSTDPARKSQEITLSHVWVQRWFHNPSASPKKKPGAVVVSLPESSEAALDFQKKQFPST
AAMALMGKAMNGFCPCEFRKSGSSVVWNTK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G16365 F-box family protein (.1.2.3.4... Potri.004G157000
[exp]
0 1
AT4G32770 ATSDX1, VTE1 tocopherol cyclase, chloroplas... Potri.006G240100
[exp]
2.00 0.8519
AT5G42240 SCPL42 serine carboxypeptidase-like 4... Potri.002G071800
[exp]
2.23 0.8242
AT4G36980 unknown protein Potri.007G044100
[exp]
6.16 0.8392
AT3G54190 Transducin/WD40 repeat-like su... Potri.016G142600
[exp]
8.94 0.7966
AT3G23530 Cyclopropane-fatty-acyl-phosph... Potri.010G067900
[exp]
15.29 0.7918
AT4G28760 Protein of unknown function (D... Potri.014G194600
[exp]
16.00 0.7655
AT1G29050 TBL38 TRICHOME BIREFRINGENCE-LIKE 38... Potri.001G023900
[exp]
17.14 0.8366
AT4G28990 RNA-binding protein-related (.... Potri.018G083100
[exp]
17.23 0.8013
AT4G27220 NB-ARC domain-containing disea... Potri.005G041101
[exp]
21.07 0.8165
Potri.006G143901
[exp]
22.95 0.7978

Potri.004G157000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.