Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	APL3.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39210 808 / 0 APL3 Glucose-1-phosphate adenylyltransferase family protein (.1) AT2G21590 759 / 0 APL4 Glucose-1-phosphate adenylyltransferase family protein (.1.2) AT1G27680 731 / 0 APL2 ADPGLC-PPase large subunit (.1) AT5G19220 659 / 0 ADG2, APL1 ADP GLUCOSE PYROPHOSPHORYLASE 2, ADP glucose pyrophosphorylase large subunit 1 (.1) AT5G48300 472 / 1e-162 APS1, ADG1 ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 1, ADP glucose pyrophosphorylase 1 (.1) AT1G05610 338 / 9e-111 APS2 ADP-glucose pyrophosphorylase small subunit 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G118800 [exp] 1012 / 0 AT4G39210 808 / 0.0 Glucose-1-phosphate adenylyltransferase family protein (.1) Potri.002G033400 [exp] 799 / 0 AT1G27680 822 / 0.0 ADPGLC-PPase large subunit (.1) Potri.005G229700 [exp] 792 / 0 AT1G27680 810 / 0.0 ADPGLC-PPase large subunit (.1) Potri.014G110000 [exp] 719 / 0 AT1G27680 737 / 0.0 ADPGLC-PPase large subunit (.1) Potri.008G195100 [exp] 660 / 0 AT5G19220 801 / 0.0 ADP GLUCOSE PYROPHOSPHORYLASE 2, ADP glucose pyrophosphorylase large subunit 1 (.1) Potri.014G171800 [exp] 473 / 4e-163 AT5G48300 885 / 0.0 ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 1, ADP glucose pyrophosphorylase 1 (.1) Potri.007G146100 [exp] 348 / 1e-114 AT1G05610 529 / 0.0 ADP-glucose pyrophosphorylase small subunit 2 (.1) Potri.017G001700 [exp] 348 / 6e-114 AT1G05610 532 / 0.0 ADP-glucose pyrophosphorylase small subunit 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023553 [exp] 818 / 0 AT4G39210 730 / 0.0 Glucose-1-phosphate adenylyltransferase family protein (.1) Lus10040437 [exp] 776 / 0 AT4G39210 697 / 0.0 Glucose-1-phosphate adenylyltransferase family protein (.1) Lus10007209 [exp] 688 / 0 AT1G27680 715 / 0.0 ADPGLC-PPase large subunit (.1) Lus10010088 [exp] 668 / 0 AT1G27680 697 / 0.0 ADPGLC-PPase large subunit (.1) Lus10034053 [exp] 664 / 0 AT5G19220 832 / 0.0 ADP GLUCOSE PYROPHOSPHORYLASE 2, ADP glucose pyrophosphorylase large subunit 1 (.1) Lus10010515 [exp] 650 / 0 AT5G19220 827 / 0.0 ADP GLUCOSE PYROPHOSPHORYLASE 2, ADP glucose pyrophosphorylase large subunit 1 (.1) Lus10025187 [exp] 473 / 8e-163 AT5G48300 895 / 0.0 ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 1, ADP glucose pyrophosphorylase 1 (.1) Lus10016069 [exp] 471 / 2e-162 AT5G48300 895 / 0.0 ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 1, ADP glucose pyrophosphorylase 1 (.1) Lus10042456 [exp] 315 / 2e-101 AT1G05610 504 / 4e-176 ADP-glucose pyrophosphorylase small subunit 2 (.1) Lus10026213 [exp] 274 / 4e-86 AT1G05610 437 / 1e-150 ADP-glucose pyrophosphorylase small subunit 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF00483 [poplar] [flax] NTP_transferase Nucleotidyl transferase
Representative CDS sequence Show only first row Show all	>Potri.004G157100.2 pacid=42795602 polypeptide=Potri.004G157100.2.p locus=Potri.004G157100 ID=Potri.004G157100.2.v4.1 annot-version=v4.1 ATGGATTCTTGCTGTGTTGTTTTGAGGGCTAATACTCCTGTGGCAAAAGCTAGCAAAGGTGGTTTTAACAATGGAGATACAGAGTTTTGGGGTGAAAGGA TCAGAGGGAGTTTCAATAACATTTGGGCCAATCAGTTTGCAAAAAGCTTGAAAGTTGACAAGAGTGTCAATAAGTTCACGCCTGGTGTTGCTTTCGCTGT TTTGACATCAAATAATGGCAAAGAGACTGTGACCTTACAACCGCCGCGATTCGGGAGAAGAAGAGCAGACCCAAAAAATGTAGCATCAATCATACTAGGT GGAGGTGCGGGGACTCAGCTATTTCCCCTTACCAGAAGGGCAGCAACTCCAGCTGTACCAGTTGGAGGGTGCTATAGGCTTATAGACATCCCGATGAGCA ACTGCATCAATAGTGGAATAAACAAGATTTTTGTGTTGACGCAGTTCAACTCGGCTTCTCTGAACCGGCACCTTGCGCACACGTATTTCGGAAATGGTAT TAACTTTGGAGATGGATTTGTGGAGGTTTTAGCTGCAACTCAAACGCCTGGGGAAGCAGGAATGAAATGGTTCCAAGGAACAGCAGATGCTGTGAGGCAA TTCACATGGGTTTTTGAGGATGCCAAGAACAGGAGCATTGAGAATATACTTATCTTGTCCGGAGATCATCTTTACCGAATGGATTATATGGACTTCGTGC AACATCATGTTGATAGTAATGCTGATATTACAATTTCATGTGTTGCAGTGGGCGAAAGCCGTGCATCAGATTATGGACTGGTTAAAATAGACAGCAAGGG CCAAATTTTCCAATTCACTGAAAAACCGAAGGGTTCAGAATTGAGGGAAATGCAAGTAGATACGACTCATCTAGGGTTGTCTCCGCAAGACGCCTTGAAA TCTTCCTATATTGCATCAATGGGGGTCTATGTGTTTAAAACAGATATTTTATTGAAGCTTCTGAGGTGGAGGTATCCCACATCAAATGACTTTGGATCTG AGATCATTCCTGCAGCTGTAATGGAGCACAATGTCCAAGCATATATTTTCAAAGACTACTGGGAGGATATAGGAACCATCAAGTCATTTTATGAAGCTAA CTTGGCCCTCGCTGAAGAGCCTCCTAAGTTTGAGTTTTATGACCCAAAGACACCCTTCTATACATCTCCTGGATTCCTACCACCAACCAAAATTGATAAA TGTCGGATTGTAGATGCAATAATTTCCCATGGATGTTTCTTGAGAGAATGCACTGTCCAACACTCTGTGGTCGGCGAACGCTCCCGTTTAGATTATGGCG TTGAGTTAAAGGATACCGTGATGCTTGGGGCAGACCACTACCAAACTGAAGCTGAAATTGCCTCTCTTCTGGCAGAGGGTAAAGTCCCAATTGGCGTAGG AAGGAACACAAAAATCAGGAACTGCATAATTGACAAGAATGCGAAGATAGGGAAAGACGTGATCATTACGAATAAAGATGGTGTGCAAGAAGCAGACCGG GAAGAAAAAGGGTTTTACATTCGATCTGGAATCACGATTATATTAGAAAAGGCAACAATAGAGGATGGCACAGTTATATAA
AA sequence Show only first row Show all	>Potri.004G157100.2 pacid=42795602 polypeptide=Potri.004G157100.2.p locus=Potri.004G157100 ID=Potri.004G157100.2.v4.1 annot-version=v4.1 MDSCCVVLRANTPVAKASKGGFNNGDTEFWGERIRGSFNNIWANQFAKSLKVDKSVNKFTPGVAFAVLTSNNGKETVTLQPPRFGRRRADPKNVASIILG GGAGTQLFPLTRRAATPAVPVGGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHLAHTYFGNGINFGDGFVEVLAATQTPGEAGMKWFQGTADAVRQ FTWVFEDAKNRSIENILILSGDHLYRMDYMDFVQHHVDSNADITISCVAVGESRASDYGLVKIDSKGQIFQFTEKPKGSELREMQVDTTHLGLSPQDALK SSYIASMGVYVFKTDILLKLLRWRYPTSNDFGSEIIPAAVMEHNVQAYIFKDYWEDIGTIKSFYEANLALAEEPPKFEFYDPKTPFYTSPGFLPPTKIDK CRIVDAIISHGCFLRECTVQHSVVGERSRLDYGVELKDTVMLGADHYQTEAEIASLLAEGKVPIGVGRNTKIRNCIIDKNAKIGKDVIITNKDGVQEADR EEKGFYIRSGITIILEKATIEDGTVI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G39210		APL3	Glucose-1-phosphate adenylyltr...		Potri.004G157100 [exp]	0	1	APL3.1
AT4G02890		UBQ14	Ubiquitin family protein (.1.2...		Potri.017G135600 [exp]	3.16	0.9703	Pt-SUBI.8
AT2G20560			DNAJ heat shock family protein...		Potri.011G057601 [exp]	6.63	0.9642
AT5G52640		AtHsp90-1, ATHS...	HEAT SHOCK PROTEIN 83, HEAT SH...		Potri.004G073600 [exp]	9.16	0.9638
AT4G10250		ATHSP22.0	HSP20-like chaperones superfam...		Potri.013G089200 [exp]	10.58	0.9621
AT2G26150	HSF	ATHSFA2	heat shock transcription facto...		Potri.006G226800 [exp]	11.18	0.9586
AT1G79920		AtHsp70-15	heat shock protein 70-15, Heat...		Potri.003G055800 [exp]	11.53	0.9453	Pt-HSP91.3
AT4G12400		Hop3	Hop3, stress-inducible protein...		Potri.001G119500 [exp]	12.16	0.8943	STI.2
AT2G32120		HSP70T-2	heat-shock protein 70T-2 (.1.2...		Potri.010G088600 [exp]	14.28	0.9578
AT1G03070			Bax inhibitor-1 family protein...		Potri.005G214000 [exp]	15.19	0.9569
AT5G37670		HSP15.7CI	HSP20-like chaperones superfam...		Potri.017G130700 [exp]	15.74	0.9569

Compare expression of checked genes

Potri.004G157100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.