Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34560 107 / 1e-28 unknown protein AT5G66440 93 / 1e-22 unknown protein AT2G21560 82 / 1e-18 unknown protein AT4G39190 67 / 5e-13 unknown protein AT1G27670 41 / 0.0003 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G119000 [exp] 339 / 1e-119 AT4G34560 90 / 8e-22 unknown protein Potri.005G120300 [exp] 104 / 6e-27 AT5G66440 134 / 4e-38 unknown protein Potri.007G021500 [exp] 98 / 2e-24 AT5G66440 147 / 6e-43 unknown protein Potri.015G099800 [exp] 42 / 0.0001 AT5G50610 / unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040435 [exp] 172 / 2e-53 AT5G66440 104 / 3e-27 unknown protein Lus10023551 [exp] 171 / 3e-53 AT5G66440 95 / 2e-23 unknown protein Lus10042306 [exp] 147 / 8e-44 AT5G66440 97 / 2e-24 unknown protein Lus10026353 [exp] 124 / 6e-35 AT4G34560 101 / 2e-26 unknown protein Lus10028329 [exp] 65 / 3e-12 AT5G66440 117 / 1e-31 unknown protein Lus10041775 [exp] 64 / 1e-11 AT5G66440 123 / 1e-33 unknown protein Lus10025994 [exp] 44 / 3e-05 AT5G66440 91 / 5e-22 unknown protein Lus10014287 [exp] 43 / 4e-05 AT5G66440 79 / 4e-18 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF14364 [poplar] [flax] DUF4408 Domain of unknown function (DUF4408)
Representative CDS sequence Show only first row Show all	>Potri.004G157300.1 pacid=42796257 polypeptide=Potri.004G157300.1.p locus=Potri.004G157300 ID=Potri.004G157300.1.v4.1 annot-version=v4.1 ATGGATTCATTCAACATCACCAACATCAAGATTGAGAAGGCGAACGCAATCAAGAAGCATAGGAAGATTCAAAAGATTGCAAGTTTGTTCAGGTTAATAG AAATAGGCCTAGTTCTAGCCTTGATTTCCAGGTTTTCCATTCAACTCCCAGTTGCTGTCAGGAACTCCAGTGAGTATTTTAAGGACTTAACAGTCACCCT TGTAAGTCCTCGGTTCGTGTTCGTTCTTGGTAACGTGATAGTCATCACTCTCTTTGCAAAGTCGGGCCAGTTTTCGTGTCAAGATTCTAATGGAAAGAAT TCAAGCACTGACCTTTATGAAGAGTTTGTTGAAAAGAGTGAAAAGAGCCAGGGAACTCATCATTATGAAGCTGAATGTAGAGAGAAACAGGTCACCTATG CTGAGCACAAAGTCACTGAGGATAATTCAACTTCTTTAGAAAGCGAGAAATATCATAGGAGTCAATCAGAGAGATTGAAGAGGCCAAATAGTAACAAGCC TTGCCGGGAACTGAGGCGGTCAGCAACGGAGGGATGCAGGAAAAGCATCGATTCCGATGAGGAATTGGAGAAAAGGCCATGCCCTGAGGATAAAATGAGC AACGAGGAGTTTCGATGCACGATTGAGGCTTTCATTGCTAGGCAAAAGAGGTTTCGAATAGATGAAGAGAATTCTTATGTCTTAGAGTAA
AA sequence Show only first row Show all	>Potri.004G157300.1 pacid=42796257 polypeptide=Potri.004G157300.1.p locus=Potri.004G157300 ID=Potri.004G157300.1.v4.1 annot-version=v4.1 MDSFNITNIKIEKANAIKKHRKIQKIASLFRLIEIGLVLALISRFSIQLPVAVRNSSEYFKDLTVTLVSPRFVFVLGNVIVITLFAKSGQFSCQDSNGKN SSTDLYEEFVEKSEKSQGTHHYEAECREKQVTYAEHKVTEDNSTSLESEKYHRSQSERLKRPNSNKPCRELRRSATEGCRKSIDSDEELEKRPCPEDKMS NEEFRCTIEAFIARQKRFRIDEENSYVLE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G34560			unknown protein		Potri.004G157300 [exp]	0	1
AT2G38430			unknown protein		Potri.019G030200 [exp]	4.69	0.7668
AT1G45207			Remorin family protein (.2)		Potri.014G027900 [exp]	7.74	0.8012
AT4G35300		TMT2	tonoplast monosaccharide trans...		Potri.005G098900 [exp]	8.00	0.7487
AT4G33280	B3	REM16	AP2/B3-like transcriptional fa...		Potri.002G129800 [exp]	11.22	0.7463
AT1G75060			unknown protein		Potri.014G041200 [exp]	13.19	0.7494
AT1G23380	HD	KNAT6S, KNAT6L,...	KNOTTED1-like homeobox gene 6 ...		Potri.015G079100 [exp]	15.87	0.7083
AT3G04730	AUX_IAA	IAA16	indoleacetic acid-induced prot...		Potri.005G053900 [exp]	23.47	0.6873
AT1G46264	HSF	SCZ, AT-HSFB4	SCHIZORIZA, heat shock transcr...		Potri.014G027100 [exp]	25.80	0.7464	Pt-HSFB4.2
AT1G70550			Protein of Unknown Function (D...		Potri.008G188000 [exp]	27.74	0.7261
AT3G08490			unknown protein		Potri.001G267200 [exp]	28.19	0.7467

Compare expression of checked genes

Potri.004G157300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.