Plant FIBer expression Database

DHFR-TS-1,THY.3 (Potri.004G157400) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol DHFR-TS-1,THY.3
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G16370 870 / 0 THY-1 thymidylate synthase 1 (.1)
AT4G34570 853 / 0 THY-2 thymidylate synthase 2 (.1)
AT2G21550 587 / 0 Bifunctional dihydrofolate reductase/thymidylate synthase (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G119200
[exp]
996 / 0 AT2G16370 845 / 0.0 thymidylate synthase 1 (.1)
Potri.005G230400
[exp]
321 / 5e-107 AT2G16370 303 / 2e-100 thymidylate synthase 1 (.1)
Potri.005G230700
[exp]
317 / 2e-105 AT2G16370 299 / 8e-99 thymidylate synthase 1 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040434
[exp]
872 / 0 AT2G16370 799 / 0.0 thymidylate synthase 1 (.1)
Lus10023550
[exp]
190 / 5e-58 AT4G34570 183 / 1e-55 thymidylate synthase 2 (.1)
Lus10023549
[exp]
153 / 1e-44 AT2G16370 131 / 2e-37 thymidylate synthase 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0387 DHFred PF00186 DHFR_1 Dihydrofolate reductase
CL0387 PF00303 Thymidylat_synt Thymidylate synthase
Representative CDS sequence
>Potri.004G157400.1 pacid=42794718 polypeptide=Potri.004G157400.1.p locus=Potri.004G157400 ID=Potri.004G157400.1.v4.1 annot-version=v4.1
ATGTCTGGGGATTCTGTGGCGAACCTTTCCAATGGAAATGCCAATACACAGCAGCCTGATCCGCGGAAGACTTACCAAGTGGTTGTGGCTGCGACTAAGG
ACATGGGTATTGGGAAAGATGGGAAGCTACCATGGAAATTGCCTTCGGATCTTAAGTTTTTTAAGGATTTGACCTTGACAACGATGGATTCTGGTAAGAA
GAACGCGGTTATCATGGGAAGGAAGACGTGGGAAAGTATTCCACTCGAGCATAGGCCTCTTCCTGGTCGGCTTAATGTTGTTTTGACACGTTCTGGGAGT
TTTGATATTGCTACTGCCGAGAATGTTGTGATTTGTGGAAGCATGGGTTCTGCATTGGAGTTGTTGGCTGCGTCCCCTTATTGTTTGTCGATCGAGAAAG
TGTTTGTTATTGGAGGTGGTCAGATATTAAGAGAATCTTTGAATGCGCCTGGATGTGATGCTATCCACATTACAGAGATTGAGACGGATTTTGATTGCGA
TACTTTTATCCCTGCAATTGATACCTCTGTATTTCAGCCCTGGTACTCTTCTTTTCCCAAGGTGGAAAATGACATACGACATTGCTTTACAACTTATGTT
CGAGTGAGAAGTTCTACAATTGAATCCCATAGTCAAAACAATGGTGAGAACTCTGATGGTAATTCAGAAAATAGTAAATTTGAGGTAAAGAAGTTCTCAT
TCCTTCCCAAGATGGTATTTGAGAGACATGAGGAGTATTTATATCTCAGAATGGTTCAAGACATCATCTCGGATGGGAATTTGAAGGATGACAGGACAGG
AACTGGTACTCTATCAAAATTTGGTTGCCAGATGCGATTCAATCTGCGCAAAAATTTTCCACTTCTTACAACAAAGAAAGTATTTTGGCGAGGCGTTGTT
GAAGAACTCCTGTGGTTCATCAGTGGTTCAACAAGTGCCAAGGTCCTTCAGGAAAAGGGCATTCACATATGGGATGGCAATGCATCCAGAGAGTACCTTG
ACAGTATTGGGTTAAAGGACAGAGAGGAAGGTGACTTGGGACCTGTATATGGGTTCCAGTGGAGGCATTTTGGTGCTAGGTATACTGATATGCATGCTGA
CTACACTGGCCAGGGATTTGACCAGTTGTTAGATGTTATTGACAAGATTAAGAATAATCCAAATGATCGTCGGATTATAATCTCAGCTTGGAATCCTTCT
GATCTCAAATTGATGGCGCTTCCACCTTGCCACATGTTTGCTCAGTTCTACGTAGCCAATGGAGAATTATCATGCCAAATGTACCAGCGTTCTGCTGACA
TGGGCCTTGGTGTGCCCTTCAACATTGCATCGTATGCTCTCCTGACATGCATCATTGCTCATGTCTGTGATCTCATTCCAGGCGATTTTGTTCATGTGAT
TGGTGATGCTCATGTTTATCACACTCATATCAGGCCTCTGCAGGAGCAGCTTCGGAAACTTCCAAAGCCTTTTCCAATTTTGAAGATCAATTCTGAGAAG
AAAGACATAGATACTTTTGTGGCAGCTGATTTCAAGCTCATAGGGTATGATCCTCACCAGAAAATTGAAATGAAAATGGCGGTATAG
AA sequence
>Potri.004G157400.1 pacid=42794718 polypeptide=Potri.004G157400.1.p locus=Potri.004G157400 ID=Potri.004G157400.1.v4.1 annot-version=v4.1
MSGDSVANLSNGNANTQQPDPRKTYQVVVAATKDMGIGKDGKLPWKLPSDLKFFKDLTLTTMDSGKKNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGS
FDIATAENVVICGSMGSALELLAASPYCLSIEKVFVIGGGQILRESLNAPGCDAIHITEIETDFDCDTFIPAIDTSVFQPWYSSFPKVENDIRHCFTTYV
RVRSSTIESHSQNNGENSDGNSENSKFEVKKFSFLPKMVFERHEEYLYLRMVQDIISDGNLKDDRTGTGTLSKFGCQMRFNLRKNFPLLTTKKVFWRGVV
EELLWFISGSTSAKVLQEKGIHIWDGNASREYLDSIGLKDREEGDLGPVYGFQWRHFGARYTDMHADYTGQGFDQLLDVIDKIKNNPNDRRIIISAWNPS
DLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTCIIAHVCDLIPGDFVHVIGDAHVYHTHIRPLQEQLRKLPKPFPILKINSEK
KDIDTFVAADFKLIGYDPHQKIEMKMAV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G16370 THY-1 thymidylate synthase 1 (.1) Potri.004G157400
[exp]
0 1 DHFR-TS-1,THY.3
AT4G17050 UGLYAH ureidoglycine aminohydrolase (... Potri.001G150800
[exp]
10.48 0.7597
AT2G14170 ALDH6B2 aldehyde dehydrogenase 6B2 (.... Potri.005G147700
[exp]
15.49 0.7591
AT5G59020 Protein of unknown function (D... Potri.009G039300
[exp]
16.00 0.6710
AT1G79440 ENF1, SSADH1, A... SUCCINIC SEMIALDEHYDE DEHYDROG... Potri.010G174000
[exp]
20.24 0.6622 Pt-ALDH5.2
AT4G14720 ZIM TIFY4B, PPD2 PEAPOD 2, TIFY domain/Divergen... Potri.002G048500
[exp]
21.16 0.6937
AT1G45150 unknown protein Potri.014G180700
[exp]
25.69 0.7557
AT2G41550 Rho termination factor (.1) Potri.006G046700
[exp]
31.85 0.6899
AT3G23530 Cyclopropane-fatty-acyl-phosph... Potri.010G067900
[exp]
36.74 0.7134
AT2G39840 TOPP4 type one serine/threonine prot... Potri.006G113100
[exp]
36.98 0.6542
AT5G44280 ATRING1A ARABIDOPSIS THALIANA RING 1A, ... Potri.004G047000
[exp]
39.68 0.7402

Potri.004G157400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.