Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-SEC14.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21540 710 / 0 ATSFH3 SEC14-like 3 (.1.2.3) AT4G34580 668 / 0 SRH1, COW1 SHORT ROOT HAIR 1, CAN OF WORMS1, Sec14p-like phosphatidylinositol transfer family protein (.1) AT4G39180 652 / 0 ATSEC14, SEC14 ARABIDOPSIS THALIANA SECRETION 14, Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT4G36490 646 / 0 ATSFH12 SEC14-like 12 (.1) AT2G18180 635 / 0 Sec14p-like phosphatidylinositol transfer family protein (.1) AT2G16380 608 / 0 Sec14p-like phosphatidylinositol transfer family protein (.1) AT4G39170 606 / 0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT2G21520 601 / 0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G19650 538 / 0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G75370 503 / 2e-172 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G119400 [exp] 1048 / 0 AT2G21540 729 / 0.0 SEC14-like 3 (.1.2.3) Potri.005G119700 [exp] 702 / 0 AT4G36490 726 / 0.0 SEC14-like 12 (.1) Potri.007G020300 [exp] 693 / 0 AT4G36490 731 / 0.0 SEC14-like 12 (.1) Potri.004G157700 [exp] 617 / 0 AT2G21520 908 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.009G119500 [exp] 614 / 0 AT2G21520 975 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.002G032600 [exp] 569 / 0 AT2G21520 731 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.005G230500 [exp] 550 / 0 AT2G21520 756 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.002G243000 [exp] 424 / 3e-141 AT3G24840 638 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.011G168300 [exp] 418 / 2e-139 AT1G55690 710 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040432 [exp] 741 / 0 AT2G21540 679 / 0.0 SEC14-like 3 (.1.2.3) Lus10023547 [exp] 728 / 0 AT2G21540 664 / 0.0 SEC14-like 3 (.1.2.3) Lus10042303 [exp] 656 / 0 AT2G21540 598 / 0.0 SEC14-like 3 (.1.2.3) Lus10026355 [exp] 649 / 0 AT2G21540 583 / 0.0 SEC14-like 3 (.1.2.3) Lus10028332 [exp] 637 / 0 AT2G18180 657 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10025988 [exp] 610 / 0 AT2G18180 662 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10041779 [exp] 605 / 0 AT2G18180 645 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10040431 [exp] 595 / 0 AT2G21520 921 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10023546 [exp] 588 / 0 AT2G21520 924 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10026356 [exp] 586 / 0 AT2G21520 925 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0512 [poplar] [flax] CRAL_TRIO PF00650 [poplar] [flax] CRAL_TRIO CRAL/TRIO domain CL0214 [poplar] [flax] UBA PF03765 [poplar] [flax] CRAL_TRIO_N CRAL/TRIO, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.004G157600.5 pacid=42794299 polypeptide=Potri.004G157600.5.p locus=Potri.004G157600 ID=Potri.004G157600.5.v4.1 annot-version=v4.1 ATGGCTGATACTATGTCTGGACCGCTTGATCGAGATATCAAAGGGGGTCTTGAGAAATCCGACGCTGAATATTCCGAGGATGATAGGAAGACCAAGCTTG GATCATTGAAAAAGAAGGCAATTAGTGCCTCGAACAAGTTCAGGAATTCTTTGACAAAGAGAGGCCGGAGACACAGTAGAGTAATGTCTATTGCAATTGA AGATAACCTTAATGCTGAGGAATTACAGGCAGTGGATGCGTTTCGCCAAGCACTTATTTTGGATGAACTACTACCCTCTAAGCATGATGATCACCATATG ATGCTAAGATTTTTAAGGGCCAGGAAATTTGATATTGAGAAAGCAAAGCAAATGTGGTCTGATATGCTCAGTTGGAGGAAGGAATTCGGTGCTGACACAA TCATGGAGGACTTTGAGTTCAAGGAAATCGATGAAGTCTTGAAACACTATCCACAAGGATATCATGGAATTGACAAGGAAGGAAGACCAGTTTACATTGA AAGACTGGGTGAGATTGACGCTAACAAGCTTATACAGGTCACGACATTGGATCGGTATATGAAATACCATGTACAGGAGTTTGAGAAAACCTTCAATGTC AAGTTTCCGGCCTGTTCAATCGCAGCAAAGAAACACATTGATCAGAGCACCACTATTTTGGATGTGCAAGGAGTGGGGCTTAAGCAATTCACCAAAACTG CAAGGGAACTTATTGGCCGCATTTCAAAGATTGATGGTGACAATTACCCTGAGACCTTAAATCGGATGTTCATCATCAATGGTGGTCCTGGATTCAGGCT TTTGTGGAGCACTGTTAAACAGTTCATTGACCCCAAGACTGCCCAAAAAATCCATTTTCTGGGTAACAAATACCAGAGCAAGTTGCTTGAAGCAATTGAT GCTAGTGAGTTGCCGGAGATTTTTGGTGGTACCTGCACCTGTGCCGACAAGGGTGGTTGTATGCGTTCTGATAAGGGTCCATGGAATGATCCCGACATCT TAAAGATGGTTCACAATGGTGAAGCCAAATGCCACAGGAAAACATTTTCAGGAATTCATGAGAAGGGAATCTCCGAGGATGATCAGCCATGCATAAAGAA AAACATTTCTTTCAGCAAAGAAGTAACTGTTGATGCTGCTGATTATGGCCATCCAAAGAATCATGTAGAACATGCAATTCTTTCTCCAGTTCCTGAATCT CCCTTGAGCAAGAGGTGCAGTAGCGACCAAGACTATGAGAACTCCATTCCAATGGTGAAAAGGACCATCGATACTGCTTGGCCTACACCATTGAATAATA GAGATGGGCTCTCTAAAGAATGCCCCCCAGTGCATGGTGCTTGCAAGGCTCAAGGAGGGAGCACTCAGATATTAAATGGGATACTGACTGTTGTGATGGG AATTGTCACCATGGTTCGCATATCACGCAACATGCCTAGGAAACTTGCTGAGGTTGCTGCTTATGGCAGTCAAGTCTACTACGCTGATGAGATGGCTAAA AGCCACGTGCTGGCAGCACCATCCATCTCTACTTCTGAATACAAGAACATCATGTTGCGCATGGCTGAAATGGAAGAGAAGCTGTGTGTTCTCAGTTCAA AACCTCAAGCCATGCCCGCTGAGAAAGAGGAAATGCTGAATGCTGCGATCAAGCGAGCAGATTCCCTAGAGCAAGAGCTATCAATGGTCAAGACGGCACT TGAGGATGCCGTTGCAAAACAGCAGGAACTCCTAGCCTACATCGAAAAGAAAAAGAAGAAAAAGAGTATTTTTGGATTTTGA
AA sequence Show only first row Show all	>Potri.004G157600.5 pacid=42794299 polypeptide=Potri.004G157600.5.p locus=Potri.004G157600 ID=Potri.004G157600.5.v4.1 annot-version=v4.1 MADTMSGPLDRDIKGGLEKSDAEYSEDDRKTKLGSLKKKAISASNKFRNSLTKRGRRHSRVMSIAIEDNLNAEELQAVDAFRQALILDELLPSKHDDHHM MLRFLRARKFDIEKAKQMWSDMLSWRKEFGADTIMEDFEFKEIDEVLKHYPQGYHGIDKEGRPVYIERLGEIDANKLIQVTTLDRYMKYHVQEFEKTFNV KFPACSIAAKKHIDQSTTILDVQGVGLKQFTKTARELIGRISKIDGDNYPETLNRMFIINGGPGFRLLWSTVKQFIDPKTAQKIHFLGNKYQSKLLEAID ASELPEIFGGTCTCADKGGCMRSDKGPWNDPDILKMVHNGEAKCHRKTFSGIHEKGISEDDQPCIKKNISFSKEVTVDAADYGHPKNHVEHAILSPVPES PLSKRCSSDQDYENSIPMVKRTIDTAWPTPLNNRDGLSKECPPVHGACKAQGGSTQILNGILTVVMGIVTMVRISRNMPRKLAEVAAYGSQVYYADEMAK SHVLAAPSISTSEYKNIMLRMAEMEEKLCVLSSKPQAMPAEKEEMLNAAIKRADSLEQELSMVKTALEDAVAKQQELLAYIEKKKKKKSIFGF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G21540		ATSFH3	SEC14-like 3 (.1.2.3)		Potri.004G157600 [exp]	0	1	Pt-SEC14.2
AT1G03790	C3HZnF	SOM	SOMNUS, Zinc finger C-x8-C-x5-...		Potri.007G138300 [exp]	1.41	0.9546
AT5G59100			Subtilisin-like serine endopep...		Potri.009G037900 [exp]	1.73	0.9289
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Potri.008G070200 [exp]	2.44	0.9321
AT2G21790		ATRNR1, RNR1, C...	CRINKLY LEAVES 8, RIBONUCLEOTI...		Potri.005G194900 [exp]	3.46	0.9252
AT3G13730		CYP90D1	"cytochrome P450, family 90, s...		Potri.001G200100 [exp]	5.09	0.8884	CYP90.1
					Potri.006G276750 [exp]	5.29	0.9123
AT2G12400			unknown protein		Potri.006G060600 [exp]	5.56	0.8334
AT2G21270		UFD1	ubiquitin fusion degradation 1...		Potri.004G163200 [exp]	5.83	0.8719
AT1G63110			GPI transamidase subunit PIG-U...		Potri.001G109200 [exp]	5.91	0.9201
AT1G77610			EamA-like transporter family p...		Potri.002G084500 [exp]	8.94	0.9113

Compare expression of checked genes

Potri.004G157600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.