Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21520 908 / 0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT4G39170 867 / 0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G75370 643 / 0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G19650 640 / 0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT4G36490 558 / 0 ATSFH12 SEC14-like 12 (.1) AT2G18180 539 / 0 Sec14p-like phosphatidylinositol transfer family protein (.1) AT2G21540 523 / 0 ATSFH3 SEC14-like 3 (.1.2.3) AT4G34580 506 / 4e-174 SRH1, COW1 SHORT ROOT HAIR 1, CAN OF WORMS1, Sec14p-like phosphatidylinositol transfer family protein (.1) AT4G39180 494 / 1e-169 ATSEC14, SEC14 ARABIDOPSIS THALIANA SECRETION 14, Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT3G24840 431 / 4e-144 Sec14p-like phosphatidylinositol transfer family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G119500 [exp] 1092 / 0 AT2G21520 975 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.002G032600 [exp] 768 / 0 AT2G21520 731 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.005G230500 [exp] 763 / 0 AT2G21520 756 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.005G119700 [exp] 574 / 0 AT4G36490 726 / 0.0 SEC14-like 12 (.1) Potri.007G020300 [exp] 557 / 0 AT4G36490 731 / 0.0 SEC14-like 12 (.1) Potri.009G119400 [exp] 557 / 0 AT2G21540 729 / 0.0 SEC14-like 3 (.1.2.3) Potri.004G157600 [exp] 551 / 0 AT2G21540 709 / 0.0 SEC14-like 3 (.1.2.3) Potri.011G168300 [exp] 435 / 2e-145 AT1G55690 710 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.002G243000 [exp] 422 / 4e-140 AT3G24840 638 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040431 [exp] 873 / 0 AT2G21520 921 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10023546 [exp] 870 / 0 AT2G21520 924 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10026356 [exp] 868 / 0 AT2G21520 925 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10042302 [exp] 864 / 0 AT2G21520 910 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10024276 [exp] 570 / 0 AT2G21520 602 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10025988 [exp] 531 / 0 AT2G18180 662 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10041779 [exp] 518 / 1e-178 AT2G18180 645 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10028332 [exp] 516 / 1e-177 AT2G18180 657 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10040432 [exp] 507 / 3e-173 AT2G21540 679 / 0.0 SEC14-like 3 (.1.2.3) Lus10023547 [exp] 494 / 7e-169 AT2G21540 664 / 0.0 SEC14-like 3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0512 [poplar] [flax] CRAL_TRIO PF00650 [poplar] [flax] CRAL_TRIO CRAL/TRIO domain CL0214 [poplar] [flax] UBA PF03765 [poplar] [flax] CRAL_TRIO_N CRAL/TRIO, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.004G157700.10 pacid=42796485 polypeptide=Potri.004G157700.10.p locus=Potri.004G157700 ID=Potri.004G157700.10.v4.1 annot-version=v4.1 ATGTCGGGTCCACTGGATCGATTCGCCAGACCTTGTTTTGAGGGGTTTTCTGGAAATGATGAGCGGAGAGAGAGGAAATCTGATTTTGAGAACTCTGAGG ATGAGAGGAGAACGAGAATTGGGTCGCTGAAAAAGAAAGCCCTTAATGCATCTTCCAAGTTCAAGCATTCTCTGAAGAAGAAAAGCAATAGGAGAAAGAG TGATGGAAGGGTTAGCTCTGTTTCGATTGAGGATGTCCGAGATGTTGAGGAATTACAGGCCGTCGATCAATTTAGACAGGCTTTGGTGATGGATGAGTTA TTGCCAGAAAAACATGATGATTATCATATGATGTTGAGGTTCTTGAAAGCAAGGAAATTTGACATTGAAAGGGCAAAGCACATGTGGGCTGATATGCTTC AATGGAGAAAGGAATTTGGTACTGACACCATTATGGAGGATTTTGAATTTAAAGAGTTGGATGAAGTTTTGAAGTATTATCCTCATGGTAATCATGGCGT GGATAAAGAGGGGAGACCTATTTATATAGAAAGATTGGGAAAAGTTGAGCCTAACAAACTTATGCATGTTACGACTATGGACCGGTACGTGAGGTACCAT GTGCGGGAGTTTGAGAAAAGCTTTGCAATTAAGTTTCCAGCTTGTACTATTGCTGCAAAGAGGCATATAGATTCAAGCACAACTATTTTAGATGTTCAAG GCGTGGGACTCAAGAACTTTAACAAGTCAGCACGGGATCTCATTATGCGCCTTCAGAAGATTGATGGTGACAATTACCCTGAGACACTCCATCAAATGTT CATTATCAACGCTGGTCCTGGATTTAGGCTGTTGTGGAACACTATAAAGACTTTTCTAGATCCCAAAACGACATCCAAGATTCACGTTCTTGGAAACAAG TACCAGACCAAATTGCTTGAGATAATTGATGCCAGTGAATTGCCGGAATTTCTGGGTGGTACTTGCACATGTGCTTGTCAGGGGGGTTGCCTTCAGTCTG ATAAGGGACCATGGAAAAACCCTGAAATATTGAAGATGGTTCTTAATGGCGAACCACGTCGAGCCAGACAGGTTGTAAAAGTGCTAAACAGCGAAGGCAA GGTTATCGCTTATGCAAAGCCACGGTATCCAATGCAGTTTAAAGGTAGTGATACATCCACTGCGGAATCAGGATCTGAAGCTGAAGATATCGCATCCCCT AAAACATTGAAAAGTTACTCCCATCTTCGACTGACTCCTGTTCGTGAAGAGGCTAGGGTAGTCGGAAAGGCCGGATATGGTGGTAGCTTCCCAGGGTACG ATGAATACGTACCTATGGTTGACAAAGCTGTTGATGCTGGATGGAAAAATCCAGCAGCCATCCAGAGGCCTGTTTCCAAAGCAACAATCACCCTGCCCAA CACTGAAAAGACTCCAGAAGGTGTTCGTGTTCGAATTTTCATAGCAGTTATGGCTTTCTTCATGACACTTCTCACTCTCTTTCGCTCACTGGCATTCCAA GTAACCAAAAGGCTTCCCGGCACCTTATCTGATTGTGATCAGAGTTCTCCTGAACTTGCCCTTGATGCAACTCAAAAAGAGGAGTGCCGTCCCCCTTCAC CAACTGCTGCTTTCACTGAGACAGACCTCTCCTCTGTATTGAAAAGGCTAGGTGAGCTTGAGGAGAAAGTTGATATACTTCAAGCAAAGCCATCAGTGAT GCCTTACGAGAAAGAGGAATTACTGAATGCTGCTGTTTGTCGTGTGGATGCTTTGGAAGCAGAGCTAATTGCAACTAAAAAGGCTCTATATGAAGCTTTA ATGAGGCAGGAAGAATTGCTAGCATACATAGACAGTCAGGAGGAGGCCAAGTTCCACCGGAAAAAGAAGTTCTGCTGGTAA
AA sequence Show only first row Show all	>Potri.004G157700.10 pacid=42796485 polypeptide=Potri.004G157700.10.p locus=Potri.004G157700 ID=Potri.004G157700.10.v4.1 annot-version=v4.1 MSGPLDRFARPCFEGFSGNDERRERKSDFENSEDERRTRIGSLKKKALNASSKFKHSLKKKSNRRKSDGRVSSVSIEDVRDVEELQAVDQFRQALVMDEL LPEKHDDYHMMLRFLKARKFDIERAKHMWADMLQWRKEFGTDTIMEDFEFKELDEVLKYYPHGNHGVDKEGRPIYIERLGKVEPNKLMHVTTMDRYVRYH VREFEKSFAIKFPACTIAAKRHIDSSTTILDVQGVGLKNFNKSARDLIMRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTIKTFLDPKTTSKIHVLGNK YQTKLLEIIDASELPEFLGGTCTCACQGGCLQSDKGPWKNPEILKMVLNGEPRRARQVVKVLNSEGKVIAYAKPRYPMQFKGSDTSTAESGSEAEDIASP KTLKSYSHLRLTPVREEARVVGKAGYGGSFPGYDEYVPMVDKAVDAGWKNPAAIQRPVSKATITLPNTEKTPEGVRVRIFIAVMAFFMTLLTLFRSLAFQ VTKRLPGTLSDCDQSSPELALDATQKEECRPPSPTAAFTETDLSSVLKRLGELEEKVDILQAKPSVMPYEKEELLNAAVCRVDALEAELIATKKALYEAL MRQEELLAYIDSQEEAKFHRKKKFCW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G21520			Sec14p-like phosphatidylinosit...		Potri.004G157700 [exp]	0	1
AT3G05420		ACBP4	acyl-CoA binding protein 4 (.1...		Potri.013G018800 [exp]	2.00	0.9681
AT1G48880		TBL7	TRICHOME BIREFRINGENCE-LIKE 7 ...		Potri.005G060800 [exp]	4.69	0.9609
AT3G08550		ABI8, ELD1, KOB...	KOBITO, ABA INSENSITIVE 8, elo...		Potri.001G022700 [exp]	5.09	0.9478	ABI8.2
AT5G12250		TUB6	beta-6 tubulin (.1)		Potri.009G067100 [exp]	6.00	0.9530
AT1G12000			Phosphofructokinase family pro...		Potri.011G015600 [exp]	6.92	0.9546
AT1G14020			O-fucosyltransferase family pr...		Potri.008G090600 [exp]	7.07	0.9497
AT5G37310			Endomembrane protein 70 protei...		Potri.004G075450 [exp]	7.48	0.9536
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Potri.002G222400 [exp]	7.48	0.9526
AT1G60070			Adaptor protein complex AP-1, ...		Potri.016G104700 [exp]	8.94	0.9456
AT1G71270		ATVPS52, TTD8, ...	T-DNA TRANSMISSION DEFECT 8, P...		Potri.006G027100 [exp]	9.89	0.9478	Pt-POK.1

Compare expression of checked genes

Potri.004G157700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.