Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ATRH1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15850 739 / 0 ATRH1 RNA helicase 1 (.1) AT5G60990 171 / 2e-47 DEA(D/H)-box RNA helicase family protein (.1) AT4G16630 171 / 8e-46 DEA(D/H)-box RNA helicase family protein (.1) AT3G22330 150 / 5e-39 ATRH53, PMH2 putative mitochondrial RNA helicase 2 (.1) AT3G22310 148 / 3e-38 ATRH9, PMH1 RNA HELICASE 9, putative mitochondrial RNA helicase 1 (.1) AT5G26742 145 / 4e-37 EMB1138 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) AT3G18600 140 / 7e-36 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G33730 140 / 4e-35 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G65900 139 / 5e-35 DEA(D/H)-box RNA helicase family protein (.1) AT3G16840 137 / 5e-34 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G249100 [exp] 198 / 7e-58 AT5G60990 619 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.007G068800 [exp] 189 / 4e-54 AT5G60990 656 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.016G013900 [exp] 172 / 6e-48 AT5G60990 579 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.005G241300 [exp] 159 / 1e-41 AT4G16630 829 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.005G000100 [exp] 147 / 1e-37 AT5G26742 924 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Potri.016G023100 [exp] 142 / 5e-36 AT3G22330 648 / 0.0 putative mitochondrial RNA helicase 2 (.1) Potri.005G000500 [exp] 142 / 5e-36 AT5G26742 885 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Potri.010G063600 [exp] 142 / 7e-36 AT3G16840 782 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G024100 [exp] 140 / 1e-35 AT3G22330 654 / 0.0 putative mitochondrial RNA helicase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028117 [exp] 817 / 0 AT4G15850 698 / 0.0 RNA helicase 1 (.1) Lus10042818 [exp] 419 / 6e-144 AT4G15850 369 / 4e-124 RNA helicase 1 (.1) Lus10031182 [exp] 195 / 2e-56 AT5G60990 674 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10031761 [exp] 193 / 1e-55 AT5G60990 679 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10042754 [exp] 160 / 8e-42 AT1G16280 983 / 0.0 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) Lus10038950 [exp] 146 / 1e-37 AT3G18600 748 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10030523 [exp] 146 / 2e-37 AT2G40700 799 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10012874 [exp] 145 / 3e-37 AT2G40700 793 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10035410 [exp] 145 / 5e-37 AT3G22330 692 / 0.0 putative mitochondrial RNA helicase 2 (.1) Lus10027240 [exp] 144 / 5e-37 AT3G18600 748 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0023 [poplar] [flax] P-loop_NTPase PF04851 [poplar] [flax] ResIII Type III restriction enzyme, res subunit
Representative CDS sequence Show only first row Show all	>Potri.004G158000.2 pacid=42793854 polypeptide=Potri.004G158000.2.p locus=Potri.004G158000 ID=Potri.004G158000.2.v4.1 annot-version=v4.1 ATGGAGGAATCAACAATAGCAAAACAGAATAAGAATGTGCCAGTGTTGCCATGGATGAGAAGCCCGGTTGATGTAAGCAAATTTGAAGAGTACCCGCTTG ATATCCTCCCTTGCCTTGACCCCAGGTTGAAGATGGCTTTGCAGAATATGGGTTTCAAGACACTTTTTCCAGTTCAAATTGCGGTTTGGCAAGAGACTAT AGGGCCAGGTGCCTTTGAGAGAGACCTTTGCATTAATTCACCAACAGGAAGTGGCAAAACTTTAGCCTATGCTTTGCCAATTGTGCAATTGCTTTCGACT CGCGCTGTCAAATGTCTCCGTGCATTGGTTGTTTTGCCCACTCGTGATTTAGCCTTGCAGGTTAAACAAGTTTTTGCTGCCATAGCACCTGCTATGGGCT TGTCTGTTGGTTTGGCTGTGGGCCAATCTTCAATTGCTGATGAAATTTCAGAACTTATTAAGAAACCTGAGCATGAGGCTGGGATTTGTTATGACCCCCA AGATGTTTTGCAAGAATTACAGAGTTCAGTGGATATATTGGTGGCAACCCCAGGAAGGCTCATGGACCATATCACTACCACTAAGGGATTTACACTTGAG CACCTCTGTTATCTTGTTGTTGATGAAACAGACCGCTTGCTCAGGGAATCATACCAATCTTGGCTTCCGACTGTGCTCAAATTGACCCGCCCTTATGATG AAAGCCTCGTGCCTGGTGTTAATAATTTTCTTCCTTGTGCATCTGGTTCCTTAAAAACCATAAGGAGATGTGGTGTCGAAAGGGGGTTCAAGGGTAAATC TTACCCTAGGCTTGCGAAGATGGTTTTATCTGCCACATTAACCCAAGATCCAAGCAAGCTTGCTCAACTTAATCTGCATCATCCTTTATTCTTGACAACT GGTCAAAGACGTTATCAACTCCCTGAAAAATTAGAATCCTACAAACTGATCTGCGTGTCCAAGCTGAAACCACTTTACTTGGTTGCGGTTCTACAACATT TAGGAGGGGAGAAATGTATTGTTTTCACATCATCTGTGGAGTCAACTCATCGACTTTGCACCTTACTGAACTTTTTTGGTGATTTGAAAGTCAAGATCAA GGAGTATTCGGGTCTTCAACGTCAATCAGTAAGAAGCAAGACCCTGAAGGCCTTCCGAGAAGGGGAGATACAAGTACTTGTTTCCTCCGATGCGATGACT CGTGGAATGGATATTGAAGGAGTGAGAAATATCATTAATTATGATATGCCTGCGTATGTAAAGACATATGTTCATCGAGCTGGTCGAACGGCAAGAGCTG GCCAGACTGGGCGTTGCATCACATTGTTGCGTACACATGAGGTAAAACGTTTCAAGAAACTGTTACAGAAAGCTGATAATGATTCTTGTCCAATTTACTC CATCCCTTCCAGCTCTGTTAAGTCACTTCACCCCTTCTATTTATCTGCACTGGAGAAACTTAAAGAAACAGTTCAATCAGAAACATCAAGAAAGGGAAAA GTTGGTATTAAATTTTCAAGAGTGAGTAAAGGAGAGAAGAAATCCTTGGAGGAATAG
AA sequence Show only first row Show all	>Potri.004G158000.2 pacid=42793854 polypeptide=Potri.004G158000.2.p locus=Potri.004G158000 ID=Potri.004G158000.2.v4.1 annot-version=v4.1 MEESTIAKQNKNVPVLPWMRSPVDVSKFEEYPLDILPCLDPRLKMALQNMGFKTLFPVQIAVWQETIGPGAFERDLCINSPTGSGKTLAYALPIVQLLST RAVKCLRALVVLPTRDLALQVKQVFAAIAPAMGLSVGLAVGQSSIADEISELIKKPEHEAGICYDPQDVLQELQSSVDILVATPGRLMDHITTTKGFTLE HLCYLVVDETDRLLRESYQSWLPTVLKLTRPYDESLVPGVNNFLPCASGSLKTIRRCGVERGFKGKSYPRLAKMVLSATLTQDPSKLAQLNLHHPLFLTT GQRRYQLPEKLESYKLICVSKLKPLYLVAVLQHLGGEKCIVFTSSVESTHRLCTLLNFFGDLKVKIKEYSGLQRQSVRSKTLKAFREGEIQVLVSSDAMT RGMDIEGVRNIINYDMPAYVKTYVHRAGRTARAGQTGRCITLLRTHEVKRFKKLLQKADNDSCPIYSIPSSSVKSLHPFYLSALEKLKETVQSETSRKGK VGIKFSRVSKGEKKSLEE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G15850		ATRH1	RNA helicase 1 (.1)		Potri.004G158000 [exp]	0	1	ATRH1.1
AT1G08070		EMB3102, OTP82	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.005G011000 [exp]	1.41	0.8702
AT4G21090		ATMFDX2	ARABIDOPSIS MITOCHONDRIAL FER...		Potri.001G044700 [exp]	2.82	0.8402
AT3G26922			F-box/RNI-like superfamily pro...		Potri.011G104300 [exp]	6.24	0.8495
AT2G46230			PIN domain-like family protein...		Potri.002G166200 [exp]	7.74	0.7753
AT1G75340	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.006G081100 [exp]	7.93	0.8250
					Potri.010G111100 [exp]	9.16	0.8284
AT1G02020			nitroreductase family protein ...		Potri.002G146100 [exp]	9.21	0.8354
AT5G41990		EIP1, ATWNK8, W...	EMF1-Interacting Protein 1, wi...		Potri.001G085500 [exp]	12.32	0.7958	WNK8.2
AT2G39930		ATISA1, ISA1	ARABIDOPSIS THALIANA ISOAMYLAS...		Potri.006G070800 [exp]	15.00	0.7637
AT4G27510			unknown protein		Potri.004G133900 [exp]	16.00	0.8015

Compare expression of checked genes

Potri.004G158000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.