Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39150 469 / 3e-167 DNAJ heat shock N-terminal domain-containing protein (.1.2) AT2G21510 450 / 1e-159 DNAJ heat shock N-terminal domain-containing protein (.1) AT1G21080 351 / 5e-120 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) AT1G76700 338 / 5e-115 DNAJ heat shock N-terminal domain-containing protein (.1) AT1G77020 331 / 2e-112 DNAJ heat shock N-terminal domain-containing protein (.1) AT1G59980 75 / 8e-15 GPS4, ARL2 ,ATDJC39 gravity persistence signal 4, ARG1-like 2 (.1) AT5G48030 74 / 2e-14 GFA2 gametophytic factor 2 (.1) AT5G22060 69 / 1e-12 ATJ2 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) AT1G24120 67 / 3e-12 ARL1 ARG1-like 1 (.1) AT5G01390 66 / 4e-12 DNAJ heat shock family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G119800 [exp] 556 / 0 AT4G39150 511 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Potri.002G000300 [exp] 366 / 1e-125 AT1G21080 602 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Potri.005G260400 [exp] 360 / 2e-123 AT1G21080 585 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Potri.002G074600 [exp] 328 / 5e-111 AT1G77020 593 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.005G185800 [exp] 317 / 7e-107 AT1G77020 582 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.001G271300 [exp] 81 / 1e-16 AT5G48030 530 / 0.0 gametophytic factor 2 (.1) Potri.009G065500 [exp] 79 / 3e-16 AT5G48030 504 / 1e-177 gametophytic factor 2 (.1) Potri.006G056400 [exp] 71 / 8e-14 AT3G12170 370 / 5e-130 Chaperone DnaJ-domain superfamily protein (.1) Potri.018G034600 [exp] 71 / 2e-13 AT5G25530 410 / 8e-144 DNAJ heat shock family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017472 [exp] 495 / 3e-177 AT4G39150 519 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10028809 [exp] 494 / 4e-177 AT4G39150 517 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10041972 [exp] 482 / 2e-172 AT4G39150 534 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10017980 [exp] 478 / 6e-171 AT4G39150 532 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10013198 [exp] 351 / 8e-120 AT1G21080 580 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Lus10030713 [exp] 345 / 2e-116 AT1G21080 573 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Lus10042774 [exp] 312 / 2e-104 AT1G77020 497 / 1e-176 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10029744 [exp] 269 / 8e-88 AT1G77020 452 / 6e-159 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10035855 [exp] 78 / 9e-16 AT5G48030 524 / 0.0 gametophytic factor 2 (.1) Lus10036638 [exp] 77 / 2e-15 AT5G48030 516 / 0.0 gametophytic factor 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain CL0392 [poplar] [flax] PF14308 [poplar] [flax] DnaJ-X X-domain of DnaJ-containing
Representative CDS sequence Show only first row Show all	>Potri.004G158300.2 pacid=42794028 polypeptide=Potri.004G158300.2.p locus=Potri.004G158300 ID=Potri.004G158300.2.v4.1 annot-version=v4.1 ATGGTCAAAGATACAGCCTTTTATGACCTTTTGGGGGTTAAGGTCGAGGCGACACCGGCAGAGATCAAGAAGGCTTACTATCTCAAGGCAAGGATAGTTC ATCCAGATAAAAATCCTGGAGATCCAAAAGCTGCAGAAAATTTTCAGATGCTCAGTGAAGCATACCAGATCTTAAGTGATCCCCAGAAGCGTGAAAAATA TGACATGTCTGGAAAGGAAGCAATGACACAGGAATCCATGGTGGATCCTTCAGCTGTCTTTGGAATGATGTTTGGGAGTGAATTATTTGAAGATTACGTT GGCCAACTTGCATTGGCGACAATAGCATCTCTTGAAAATGAAGGAGGCATACAGAATATGGAAATGAAGATGAAGGTGCTGCAGAGAGAGAGAGAAGAAA AGCTTATAACAATTCTCAAAAATTGCCTTGAAAAATTTGTTGAGGGCCGGGAAAATGAGTTTACAAATTGGGCAAAGTCAGAAGCAAGCCGCCTCTCTGC AGCTGCATTTGGCGAGGCTATGCTGCACACCATTGGCTATATCTACACAAGGAAAGCTTCCAAGGAGCTTGGAAAGGACAAACGGTATATGAAGGTACCA TTTTTCGCAGAATGGGTACGAGATAAAGGACACCTGATAAAATCACAAGTAATGGCAGCTTCAGGTGCTGTTTCCTTAATTCAAATACAGGAGGAGTTGA AGAAGTTGAATGGAGTAGAAAACCAAGAAGAGAGCATGCAGAAAATCCTTGAAGATAAGAAGGATGCTATGCTTCAATCACTTTGGCAGATCAACGTGGT TGATATTGAACGTACCTTATCACGTGTTTGCCTGGAAGTACTTATAGACCCTAGCGTGTACCGTGATGTTCTGAGGTCACGAGCTAAAGGATTGAAAAAA CTTGGAACAATCTTCCAATCTTCTTCTCAGGGCGCCAAAGCTGCATACAGTCGGGAAAACAGTTTGCGCCATGAAAAAGACCAGCCAATGAACGCCGGTT CATCATCATAG
AA sequence Show only first row Show all	>Potri.004G158300.2 pacid=42794028 polypeptide=Potri.004G158300.2.p locus=Potri.004G158300 ID=Potri.004G158300.2.v4.1 annot-version=v4.1 MVKDTAFYDLLGVKVEATPAEIKKAYYLKARIVHPDKNPGDPKAAENFQMLSEAYQILSDPQKREKYDMSGKEAMTQESMVDPSAVFGMMFGSELFEDYV GQLALATIASLENEGGIQNMEMKMKVLQREREEKLITILKNCLEKFVEGRENEFTNWAKSEASRLSAAAFGEAMLHTIGYIYTRKASKELGKDKRYMKVP FFAEWVRDKGHLIKSQVMAASGAVSLIQIQEELKKLNGVENQEESMQKILEDKKDAMLQSLWQINVVDIERTLSRVCLEVLIDPSVYRDVLRSRAKGLKK LGTIFQSSSQGAKAAYSRENSLRHEKDQPMNAGSSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G39150			DNAJ heat shock N-terminal dom...		Potri.004G158300 [exp]	0	1
AT2G02360		ATPP2-B10	phloem protein 2-B10 (.1)		Potri.001G050100 [exp]	1.41	0.8541
AT1G01350	C3HZnF		Zinc finger (CCCH-type/C3HC4-t...		Potri.014G097300 [exp]	1.41	0.8716
AT5G18200			UTP:galactose-1-phosphate urid...		Potri.006G233200 [exp]	5.83	0.7976
AT5G49230		HRB1	HYPERSENSITIVE TO RED AND BLUE...		Potri.008G213400 [exp]	6.32	0.8107
AT1G54150			E3 Ubiquitin ligase family pro...		Potri.003G065500 [exp]	9.16	0.8293
AT5G47430			DWNN domain, a CCHC-type zinc ...		Potri.001G156000 [exp]	9.48	0.8248
					Potri.010G118500 [exp]	11.35	0.7586
AT4G04885		PCFS4	PCF11P-similar protein 4 (.1)		Potri.017G017800 [exp]	12.00	0.8259
					Potri.001G077400 [exp]	14.00	0.8209
					Potri.004G111050 [exp]	14.14	0.8264

Compare expression of checked genes

Potri.004G158300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.